mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,492,082 | 0 | T | G | 38.6% | 64.2 / 18.1 | 44 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,795,650 | 0 | A | C | 34.7% | 92.2 / 13.9 | 49 | V39G (GTG→GGG) | celF | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| * | REL606 | 1,747,903 | 0 | G | T | 22.1% | 186.6 / 33.7 | 68 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| Marginal new junction evidence (lowest skew 10 of 43 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 58 (1.140) | 8 (0.180) | 8/134 | 3.9 | 12.9% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 56 (1.240) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | 2037848 = | 43 (0.850) | 7 (0.150) | 6/140 | 4.8 | 12.6% | coding (283/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038306 = | 57 (1.200) | coding (643/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 2038724 = | 37 (0.730) | 5 (0.110) | 5/134 | 5.0 | 13.5% | coding (225/822 nt) | wbbB | putative glycosyltransferase WbbB |
| ? | REL606 | 2039214 = | 31 (0.680) | coding (481/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 2038074 = | 53 (1.040) | 6 (0.130) | 5/134 | 5.0 | 10.6% | coding (57/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038286 = | 54 (1.190) | coding (663/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 2041054 = | 54 (1.060) | 9 (0.200) | 5/136 | 5.1 | 13.2% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 70 (1.520) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2040188 = | 50 (0.980) | 5 (0.110) | 5/138 | 5.1 | 8.8% | intergenic (‑60/+83) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040424 = | 58 (1.240) | coding (960/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | = 2679623 | 77 (1.520) | 6 (0.130) | 5/140 | 5.2 | 8.2% | coding (695/1557 nt) | ECB_02510 | Recombinase |
| ? | REL606 | = 2680101 | 62 (1.310) | coding (1173/1557 nt) | ECB_02510 | Recombinase | |||||
| * | ? | REL606 | 2041421 = | 70 (1.380) | 4 (0.090) | 4/132 | 5.4 | 6.4% | coding (1400/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041804 = | 56 (1.260) | coding (1017/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 3022392 = | 55 (1.080) | 5 (0.110) | 4/136 | 5.5 | 8.5% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 58 (1.260) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | = 2680447 | 77 (1.520) | 5 (0.110) | 4/136 | 5.5 | 7.3% | coding (1519/1557 nt) | ECB_02510 | Recombinase |
| ? | REL606 | = 2680950 | 58 (1.260) | coding (476/897 nt) | ECB_02511 | ParB family protein | |||||