Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A122 F1 I1 R1
|
27 |
151.2 |
10056804 |
92.4% |
9292486 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,014,531 |
IS150 (+) +3 bp |
coding (1112‑1114/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2774435 = | NA (NA) | 210 (1.400) |
97/150 |
0.0 |
99.0% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3014531 = |
2 (0.010) | coding (1112/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 194 (1.310) |
95/148 |
0.0 |
98.9% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 3014533 |
2 (0.010) | coding (1114/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
Only 100 of 210 total aligned reads displayed.
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774509‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTACT > REL606/3014531‑3014605
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:228496/76‑1
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 2:4038613/1‑76
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACa > 1:3720634/1‑75
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACT > 2:1531282/1‑76
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTG < 1:5018701/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTG < 1:4590876/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTG > 1:4224691/1‑76
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTG < 1:3160936/76‑1
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTT > 2:2180787/1‑76
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTT < 2:2881608/76‑1
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTA < 2:2104285/76‑1
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTA < 2:4727508/76‑1
TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTAT < 1:451269/76‑1
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATT > 2:2740652/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATT < 1:3928538/76‑1
CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTG < 1:1166804/76‑1
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGA < 2:4403244/76‑1
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGA > 1:2818502/1‑76
ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAA > 1:4392988/1‑76
ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAA < 1:3611883/76‑1
TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAG < 2:4640683/76‑1
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGAT > 1:217627/1‑76
AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATC < 2:796414/76‑1
ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCA < 1:811052/76‑1
TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCAC > 2:2446365/1‑76
TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCAC > 2:3993213/1‑76
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACC < 2:4892822/76‑1
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACC > 1:1715709/1‑76
TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCG < 1:325097/76‑1
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGA > 1:4953074/1‑76
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGA > 1:4742558/1‑76
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGA < 2:321392/76‑1
GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAG < 1:1599904/76‑1
AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGAC < 1:848431/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAA > 1:2652927/1‑76
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAA > 1:2341733/1‑76
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAA > 1:2122915/1‑76
GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACG > 2:708747/1‑76
GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACG < 2:235646/76‑1
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCT > 1:3002747/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCT > 1:715525/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCT < 1:1850615/76‑1
CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTG < 2:3088150/76‑1
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTC < 2:3629886/76‑1
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTC > 2:4543563/1‑76
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTC < 1:777186/76‑1
TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCT > 1:2544331/1‑76
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAA < 2:1198754/76‑1
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 1:2396676/76‑1
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 2:1767138/76‑1
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 1:1953553/76‑1
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 2:2969791/76‑1
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 2:4224691/76‑1
TCGTGTTTAACTGTCCAACTTTTTAGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAAT < 1:2427746/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG < 1:4705032/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG > 1:3515817/1‑76
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG < 2:2943999/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG < 2:732550/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG < 1:1429466/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG < 1:4556582/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATG > 1:4895417/1‑76
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAG < 1:4681015/76‑1
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAG < 2:2988602/76‑1
TTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTT < 2:2624808/76‑1
TTTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTT < 1:1084482/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTT > 2:863982/1‑76
TTAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTT > 1:4301664/1‑76
TAACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTG > 1:3189773/1‑76
AACTGTCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGT > 2:3803161/1‑76
TCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGA < 1:1991000/76‑1
TCCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGA < 1:837351/76‑1
CCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAA < 1:341086/76‑1
CCAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAA > 1:2314697/1‑76
CAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAA > 2:317834/1‑76
CAACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAA < 2:3887822/76‑1
AACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAAT < 1:3645028/76‑1
AACTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAAT < 1:4097491/76‑1
CTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTA < 1:2682254/76‑1
CTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTA < 2:1847662/76‑1
CTTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTA < 1:4006303/76‑1
TTTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTAT < 2:2341733/76‑1
TTTTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATT > 2:3917916/1‑76
TTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTA < 1:3114509/76‑1
TTGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTA < 1:4285304/76‑1
TGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAA > 2:3834535/1‑76
TGGGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAA > 2:4010044/1‑76
GGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAAT < 2:3371701/76‑1
GGGTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAAT < 1:3311446/76‑1
GTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCA < 2:3449087/76‑1
GTCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCA > 2:4367446/1‑76
TCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAA > 1:3883706/1‑76
TCAGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAA < 2:1024425/76‑1
AGTACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATT < 2:2281633/76‑1
AGTACACTGTTATGGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATT < 2:161425/76‑1
TACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTT > 1:2579297/1‑76
TACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTT < 1:660803/76‑1
ACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTA < 2:3748148/76‑1
ACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTA < 1:483876/76‑1
ACACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTA < 1:132732/76‑1
CACTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTAC < 2:3555551/76‑1
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774509‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGTTATTGAAGATCACCGAGACTAACGCTGTCGCTGAATGAGTTTGTGATGAAATTATTTAAATCAATTTTACT > REL606/3014531‑3014605
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
