Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
20 |
54.5 |
3547384 |
95.1% |
3373562 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,145,846 |
A→C |
intergenic (+177/‑18) |
dnaG → / → rpoD |
DNA primase/RNA polymerase sigma factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,145,846 | 0 | A | C | 100.0%
| 172.3
/ NA
| 41 | intergenic (+177/‑18) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (17/24); total (17/24) |
AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGC > REL606/3145773‑3145918
|
aaaCAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAg < 1:981071/76‑1 (MQ=255)
aaaCAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAg > 2:546935/1‑76 (MQ=255)
atcaacCGTATAATATCAGCGTTCACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAgt < 2:1557531/74‑1 (MQ=255)
cGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGAt > 1:382245/1‑76 (MQ=255)
ttGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCACTCGCCCAACACCAACCTCATGAAATCAGTGTGGATAc < 1:1473612/76‑1 (MQ=255)
tgtaTTTCAGCGTTAGCGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATAcc > 1:159973/4‑76 (MQ=255)
tttCAGCGTTAACGGCTNAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTATGCATACCGTCt > 1:227243/1‑76 (MQ=255)
ttCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCtt < 2:1641651/76‑1 (MQ=255)
ttCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCtt < 2:565278/76‑1 (MQ=255)
ttCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCtt < 2:558312/76‑1 (MQ=255)
tCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTa < 2:849321/76‑1 (MQ=255)
tCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTa < 2:1150244/76‑1 (MQ=255)
tCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTa < 2:1150236/76‑1 (MQ=255)
cAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACNGTCTTAt < 2:1424414/76‑1 (MQ=255)
gCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCCGTGTGGATACCGTCTTATgg < 2:148947/76‑1 (MQ=255)
gTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAg > 1:573408/1‑76 (MQ=255)
ttAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGc > 2:576263/1‑76 (MQ=255)
aCGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCaaa < 1:988248/76‑1 (MQ=255)
aCGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCaaa < 2:799152/76‑1 (MQ=255)
ggCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAAc > 1:301983/1‑76 (MQ=255)
tGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCg > 1:1272666/1‑76 (MQ=255)
gAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGc < 2:331269/76‑1 (MQ=255)
gAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGc > 2:1520844/1‑76 (MQ=255)
aaGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCa > 2:185271/1‑76 (MQ=255)
aaGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCa > 2:642511/1‑76 (MQ=255)
ggACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGt < 2:1378525/76‑1 (MQ=255)
gACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGTGCAAAACCCGCAGTc < 2:152531/76‑1 (MQ=255)
gACATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTc < 2:1657439/76‑1 (MQ=255)
aCATCGGGTCAATCGCCCAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTca < 2:1524432/76‑1 (MQ=255)
cccAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCTCAGTCACAGCTGAAActtctt < 2:158935/76‑1 (MQ=255)
cccAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAActtctt < 1:334543/76‑1 (MQ=255)
ccAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCAGAAACTTCTTg < 1:50900/76‑1 (MQ=255)
cAACACCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGt > 1:366383/1‑76 (MQ=255)
nacacCAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTc > 1:1369544/2‑76 (MQ=255)
cAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCg < 2:1600609/76‑1 (MQ=255)
cAACCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCg < 2:1146584/76‑1 (MQ=255)
aCCTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTg > 1:1360232/1‑76 (MQ=255)
ccTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTgg > 2:1483831/1‑76 (MQ=255)
ccTCATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTgg < 2:1043548/76‑1 (MQ=255)
cATGAAATCAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTaa > 1:1394514/1‑76 (MQ=255)
aaTCAGTGTGGATATCGTCTTATGGAGNAAAACCCGAAGGCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGc > 1:1553203/1‑76 (MQ=255)
|
AAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAGC > REL606/3145773‑3145918
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
