Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A40 F1 I1 R1
|
16 |
59.7 |
3732628 |
97.2% |
3628114 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,876,460 |
A→C |
L115* (TTA→TGA) |
araE ← |
arabinose transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,876,460 | 0 | A | C | 100.0%
| 212.9
/ NA
| 51 | L115* (TTA→TGA) | araE | arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (30/21); total (30/21) |
TTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAG > REL606/2876387‑2876530
|
ttCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCAc < 2:1696828/76‑1 (MQ=255)
ttCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCAc < 1:20840/76‑1 (MQ=255)
ttCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCAc > 2:1719972/1‑76 (MQ=255)
aGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAAGGCCCAGCACCACACGAGCGGCGACTCACAtc > 1:1124168/1‑76 (MQ=255)
aaaGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACAtctc > 1:1722677/1‑76 (MQ=255)
aaaGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACAtctc > 2:731430/1‑76 (MQ=255)
aaGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATctct > 2:1464497/1‑76 (MQ=255)
aGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTa > 2:925999/1‑76 (MQ=255)
gATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTAc < 2:1846873/76‑1 (MQ=255)
aTACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACg < 2:776924/76‑1 (MQ=255)
tACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGc < 1:800751/76‑1 (MQ=255)
aCAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGcc > 2:898896/1‑75 (MQ=255)
aCAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCt > 1:502965/1‑76 (MQ=255)
aCAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCt > 2:576688/1‑76 (MQ=255)
aCAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCt > 1:308769/1‑76 (MQ=255)
aCAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCt > 2:898899/1‑76 (MQ=255)
gaggagCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGt > 2:1770234/1‑76 (MQ=255)
gaggagCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGt > 2:1316916/1‑76 (MQ=255)
aggagCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTc > 2:451503/1‑76 (MQ=255)
aggagCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTc > 2:1405229/1‑76 (MQ=255)
gagCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGc < 1:281390/76‑1 (MQ=255)
cGGTGTAAGGCGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCaaa < 1:1456607/76‑1 (MQ=255)
cGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCaaa < 2:1263644/76‑1 (MQ=255)
ggTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCaaaa > 1:869546/1‑76 (MQ=255)
gtgtAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAg < 2:617502/76‑1 (MQ=255)
tAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCgg > 1:218818/1‑76 (MQ=255)
cgcgATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCt > 2:1847007/1‑76 (MQ=255)
cgATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCtat < 1:1154711/76‑1 (MQ=255)
cgATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCtat > 2:1532765/1‑76 (MQ=255)
cgATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCtat < 1:749029/76‑1 (MQ=255)
gATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCtata > 2:1476870/1‑76 (MQ=255)
aTCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAg > 2:160833/1‑76 (MQ=255)
aTCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAg > 2:1641980/1‑76 (MQ=255)
aTCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAAACTCTCTACGCTGGTCGAAAAAGCGGCCCCtataa > 2:1129181/1‑75 (MQ=255)
tCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGa < 1:1442687/76‑1 (MQ=255)
ccGACAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAAc < 2:838459/76‑1 (MQ=255)
cAGCAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAg > 2:1727357/1‑76 (MQ=255)
gCAATGCCCAGCCCCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTa < 1:618109/76‑1 (MQ=255)
cAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTAc < 1:478071/76‑1 (MQ=255)
cAATGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTAc < 1:925679/76‑1 (MQ=255)
aaTGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACa < 1:234682/76‑1 (MQ=255)
aaTGCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACa > 2:1813817/1‑76 (MQ=255)
gCCCAGCACCACACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAAc < 1:1861732/76‑1 (MQ=255)
caccacACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATg > 1:790248/1‑76 (MQ=255)
ccacACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGc < 2:224367/76‑1 (MQ=255)
ccacACGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGc > 2:1010401/1‑76 (MQ=255)
cacaCGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGcc > 2:1864756/1‑76 (MQ=255)
acacGAGCGGCGATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGccc > 2:1213453/1‑76 (MQ=255)
cggcgTTTCACTTCTCTACGCTGGACGCAAAAGCGGACCCTATAGAGCCGAGTACAAACAGAATGGCCCCCGCCAt < 2:971842/76‑1 (MQ=255)
ggcgATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCCTc > 1:75363/1‑76 (MQ=255)
gcgATTCACATCTCTCCGTTGTTCGCAAAGGCGGTCCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCa < 1:1267971/76‑1 (MQ=255)
gcgATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCa < 1:1477739/76‑1 (MQ=255)
gcgATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCa < 2:1243584/76‑1 (MQ=255)
cgATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAg > 2:1076083/1‑76 (MQ=255)
cgATTCACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAg > 2:1597841/1‑76 (MQ=255)
|
TTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAG > REL606/2876387‑2876530
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
