Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A110 F1 I1 R1
|
14 |
278.2 |
17968888 |
92.5% |
16621221 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,164,266 |
C→T |
D526N (GAT→AAT) |
yehU ← |
predicted sensory kinase in two‑component system with YehT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,164,266 | 0 | C | T | 99.0%
| 1141.5
/ 0.0
| 285 | D526N (GAT→AAT) | yehU | predicted sensory kinase in two‑component system with YehT |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (148/134); total (150/135) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01 |
Only 100 of 304 total aligned reads displayed.
CGGGTGTAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATCCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGATCTCCAG > REL606/2164193‑2164338
|
ggTGTAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATtcacc < 2:7785984/76‑1 (MQ=255)
ggTGTAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATtcacc < 1:6075485/76‑1 (MQ=255)
gtgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATtcacca < 2:4208358/76‑1 (MQ=255)
gtgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATtcacca < 1:7627731/76‑1 (MQ=255)
tgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAg < 1:5475712/76‑1 (MQ=255)
tgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAg > 1:5904723/1‑76 (MQ=255)
tgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAg > 2:2700575/1‑76 (MQ=255)
tgtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAg < 2:14875/76‑1 (MQ=255)
gtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGa < 2:3054627/76‑1 (MQ=255)
gtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGa > 2:1378466/1‑76 (MQ=255)
gtAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGa > 1:8294921/1‑76 (MQ=255)
aaCTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGAtt > 2:163121/1‑76 (MQ=255)
aaCTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGAtt > 1:8556166/1‑76 (MQ=255)
aCTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTc < 1:7036800/76‑1 (MQ=255)
cTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCa > 2:7225149/1‑76 (MQ=255)
cTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCa < 1:6202079/76‑1 (MQ=255)
tATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCAt < 1:931095/76‑1 (MQ=255)
tATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCAt > 2:6454582/1‑76 (MQ=255)
gtgcAGGCGCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGGTCACGTAAACGCTTTTTCACCAGATTCAt < 2:8693841/73‑1 (MQ=255)
aTCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATc > 1:8661607/1‑76 (MQ=255)
aTCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATc > 1:1108431/1‑76 (MQ=255)
cAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATccc > 2:5858577/1‑76 (MQ=255)
cAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTAACGTAAACGCTTATTCACCAGATTCATccc > 1:6733576/1‑76 (MQ=255)
ggCTCTCAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCa < 1:5958644/76‑1 (MQ=255)
ggCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCCCCAGATTCATCCCCa < 2:7628464/76‑1 (MQ=255)
ggCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCa > 1:3407108/1‑76 (MQ=255)
ggCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCa < 2:8636179/76‑1 (MQ=255)
ggCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCa > 1:6273056/1‑76 (MQ=255)
cTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGc > 2:7299982/1‑76 (MQ=255)
cTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGc < 2:7439375/76‑1 (MQ=255)
cTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGc < 2:1072079/76‑1 (MQ=255)
cTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGc > 1:7113582/1‑76 (MQ=255)
tCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGcc > 1:410143/1‑76 (MQ=255)
cacaGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGccc < 2:8747655/76‑1 (MQ=255)
caGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCAc > 2:5484288/1‑76 (MQ=255)
aGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACt < 2:212509/76‑1 (MQ=255)
aGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACt < 1:5357153/76‑1 (MQ=255)
aGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACt > 2:431816/1‑76 (MQ=255)
ggCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCGAGCCCACTg < 1:1356795/76‑1 (MQ=255)
ggCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTg < 1:7382597/76‑1 (MQ=255)
cGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGc < 1:7881474/76‑1 (MQ=255)
cGACCCTTATTCCAAAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGc < 1:2368933/76‑1 (MQ=255)
gACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCa > 1:1864878/1‑76 (MQ=255)
aCGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCAt > 2:266185/1‑76 (MQ=255)
aCGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCAt < 2:4421426/76‑1 (MQ=255)
gCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTg < 1:2922363/76‑1 (MQ=255)
cTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGCTTCATCCCCAGCCCACTGGCATTgg > 1:8725931/1‑76 (MQ=255)
cTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTgg > 1:3590391/1‑76 (MQ=255)
cTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTgg > 2:7960609/1‑76 (MQ=255)
tATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGtt < 1:381230/76‑1 (MQ=255)
tATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGtt < 2:3510863/76‑1 (MQ=255)
tATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGtt < 1:6557498/76‑1 (MQ=255)
aTTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTa < 1:6569214/76‑1 (MQ=255)
aTTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTa > 2:2261246/1‑76 (MQ=255)
ttCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTAc > 2:5108718/1‑76 (MQ=255)
ttCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTAc > 1:4846926/1‑76 (MQ=255)
ttCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTGAc > 2:182824/1‑76 (MQ=255)
ttCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATCCACCAGATTCATCCCCAGCCCACTGGCATTGGTTAc > 2:7016787/1‑76 (MQ=255)
tCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTAcc > 1:1502702/1‑76 (MQ=255)
ccATAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCg < 2:4784513/76‑1 (MQ=255)
aTAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGt < 1:8239868/76‑1 (MQ=255)
tAGTCATCGCCAATCCGTTCACGTAAACGCTTAGTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGtt < 1:263002/76‑1 (MQ=255)
tAGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGtt < 1:2056145/76‑1 (MQ=255)
aGTCATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTg < 1:2848729/76‑1 (MQ=255)
cATCGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATa < 2:3846381/76‑1 (MQ=255)
cGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACaa < 2:6206021/76‑1 (MQ=255)
cGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACaa > 2:6071576/1‑76 (MQ=255)
cGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACaa > 2:6959999/1‑76 (MQ=255)
cGCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACaa < 1:5155167/76‑1 (MQ=255)
gCCAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACaaa < 2:3117328/76‑1 (MQ=255)
ccAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAAc < 1:807576/76‑1 (MQ=255)
ccAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAAc < 1:6974202/76‑1 (MQ=255)
cAAACCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAAcc < 2:789816/76‑1 (MQ=255)
aaaCCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCg > 2:7579261/1‑76 (MQ=255)
aaaCCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCg > 2:8298323/1‑76 (MQ=255)
aaaCCGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCg < 1:7244050/76‑1 (MQ=255)
aaCCGTTCACGTAAACGCTTATCTACCAGATTACTCCCGAGCCCACTGGCATTGGATAGTGGTTCATACAAAGCgg > 2:8342581/1‑76 (MQ=255)
ccGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCGCTGGCATTGGTTACCGGTTGATACAAACCGGCa < 1:1680902/76‑1 (MQ=255)
ccGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCa > 1:4619258/1‑76 (MQ=255)
cGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCAt < 1:4946258/76‑1 (MQ=255)
cGTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCAt < 2:5655375/76‑1 (MQ=255)
gTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCAtt < 2:5033020/76‑1 (MQ=255)
gTTCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCAtt < 2:4057874/76‑1 (MQ=255)
ttCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTg < 2:6749004/76‑1 (MQ=255)
ttCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTg > 1:8797240/1‑76 (MQ=255)
tCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGt > 2:8895162/1‑76 (MQ=255)
tCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGt > 2:337289/1‑76 (MQ=255)
tCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGt > 1:4242910/1‑76 (MQ=255)
tCACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGt < 1:3082749/76‑1 (MQ=255)
cACGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTc < 1:3191480/76‑1 (MQ=255)
cGTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCtt < 2:4649457/76‑1 (MQ=255)
gTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTc < 2:5578212/76‑1 (MQ=255)
gTAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAAACGGCATTGTCTTc > 2:3695174/1‑76 (MQ=255)
ctAAACGCTTATCCTCCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTc < 2:6305869/75‑1 (MQ=255)
tAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGGTACAAACCGGAGTTGTCTTcc > 2:1299386/1‑75 (MQ=255)
tAAACGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCg < 1:1032962/76‑1 (MQ=255)
aaaCGCTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGa > 1:7491597/1‑76 (MQ=255)
cTTATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGATCTcc > 1:2989376/1‑76 (MQ=255)
ttATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGATCTCCa > 2:2935725/1‑76 (MQ=255)
tATTCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGATCTCCAg < 2:6659492/76‑1 (MQ=255)
|
CGGGTGTAACTATCAGGCTCACAGGCGACGCTTATTCCATAGTCATCGCCAAACCGTTCACGTAAACGCTTATCCACCAGATTCATCCCCAGCCCACTGGCATTGGTTACCGGTTGATACAAACCGGCATTGTCTTCGATCTCCAG > REL606/2164193‑2164338
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
