Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A131 F1 I1 R1
|
13 |
244.3 |
15300636 |
95.6% |
14627408 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,495,556 |
A→C |
intergenic (‑96/+32) |
yzgL ← / ← glgP |
hypothetical protein; b3427_1/glycogen phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,495,556 | 0 | A | C | 99.1%
| 914.7
/ ‑2.0
| 213 | intergenic (‑96/+32) | yzgL/glgP | hypothetical protein; b3427_1/glycogen phosphorylase |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base C (114/97); total (114/99) |
| Fisher's exact test for biased strand distribution p-value = 2.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 219 total aligned reads displayed.
TGGCGAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCGGCGT > REL606/3495483‑3495628
|
tGGCGAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGccc < 1:1781757/76‑1 (MQ=255)
gCGAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCt > 2:3476655/1‑76 (MQ=255)
cGAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCtt > 1:2477321/1‑76 (MQ=255)
cGAAATGATTCTCCCCGAGTCCCCGTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCtt < 2:7471276/76‑1 (MQ=255)
gAAATTATCCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCttt < 1:3022814/76‑1 (MQ=255)
gAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCttt > 2:394140/1‑76 (MQ=255)
gAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCttt < 2:2537345/76‑1 (MQ=255)
aTTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGc < 1:1469500/76‑1 (MQ=255)
tataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGccc > 2:850678/1‑76 (MQ=255)
tataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGccc < 1:3703072/76‑1 (MQ=255)
tataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGccc > 1:802942/1‑76 (MQ=255)
tataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGccc > 1:3018072/1‑76 (MQ=255)
tataCTCCCCGAGTCCCCTTGCCCATTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGccc > 2:6154862/1‑76 (MQ=255)
atccTCCCCGAGTCCCCTTGCCCCTGCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGcccc < 2:2437909/73‑1 (MQ=255)
ataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGcccc > 1:2360323/1‑76 (MQ=255)
ataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGcccc > 2:505529/1‑76 (MQ=255)
ataCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGcccc < 1:3369364/76‑1 (MQ=255)
ccTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGt < 1:2892064/75‑1 (MQ=255)
aCTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGt > 1:1109762/1‑76 (MQ=255)
ccccccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGtt < 1:1081236/74‑1 (MQ=255)
cTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGtt < 2:3279514/76‑1 (MQ=255)
cTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGtt < 1:2731239/76‑1 (MQ=255)
cTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGtt > 2:3181915/1‑76 (MQ=255)
cTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGtt < 2:5606528/76‑1 (MQ=255)
tCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTc > 2:5408058/1‑76 (MQ=255)
ccccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCt < 2:4026379/76‑1 (MQ=255)
ccccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCt > 1:1210629/1‑76 (MQ=255)
ccccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCt > 1:6354307/1‑76 (MQ=255)
ccccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCt > 2:1462560/1‑76 (MQ=255)
cccGATTCCCCTTGCCCCTTCGGGACACTTTTCCAAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCta < 2:5776832/76‑1 (MQ=255)
cccGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGTGAAAAAAACGGGCCCCTTTGGCCCCGTTCta < 2:5916319/76‑1 (MQ=255)
cGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtctt > 2:6521976/1‑76 (MQ=255)
cGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtatt > 2:2839730/1‑76 (MQ=255)
cGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtatt > 1:3533317/1‑76 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt < 2:4955168/76‑1 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt < 2:2523844/76‑1 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt > 1:2220613/1‑76 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt < 2:4804069/76‑1 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt > 1:6269357/1‑76 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt > 2:5243702/1‑76 (MQ=255)
gAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattt < 1:4575598/76‑1 (MQ=255)
aGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtattta > 1:1611965/1‑76 (MQ=255)
gTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCtatttat < 2:6830454/76‑1 (MQ=255)
ccccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATttatta > 1:7305467/1‑76 (MQ=255)
ccccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATttatta < 2:2090565/76‑1 (MQ=255)
cccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAg < 1:2326737/76‑1 (MQ=255)
cccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAg < 2:5205904/76‑1 (MQ=255)
ccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGt < 2:4581654/76‑1 (MQ=255)
ccTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGt > 1:7343303/1‑76 (MQ=255)
cTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCACCTTTGGCCCCGTTCTATTTATTAGTg > 2:3804757/1‑76 (MQ=255)
ttGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGa > 1:3393801/1‑76 (MQ=255)
ttGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGa > 2:2612898/1‑76 (MQ=255)
gCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGaaa > 2:1976079/1‑76 (MQ=255)
gCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGaaa > 1:6743780/1‑76 (MQ=255)
gCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGaaa > 2:3025577/1‑76 (MQ=255)
cccTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAAtt < 1:5386916/76‑1 (MQ=255)
ccTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTa < 2:6298657/76‑1 (MQ=255)
cTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTAc > 2:3316942/1‑76 (MQ=255)
ttCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACa < 1:2141186/76‑1 (MQ=255)
ttCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACa > 2:5934175/1‑76 (MQ=255)
cTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAt < 1:3803366/76‑1 (MQ=255)
cTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAt > 2:1059966/1‑76 (MQ=255)
tGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAtc > 1:6012855/1‑76 (MQ=255)
ggACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAtct < 2:408627/76‑1 (MQ=255)
ggACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAtct > 1:5631178/1‑76 (MQ=255)
ggACACTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAAtct > 2:1588388/1‑76 (MQ=255)
acacTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCa < 2:1720149/76‑1 (MQ=255)
acacTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCa > 2:2729651/1‑76 (MQ=255)
acacTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCa < 1:3310235/76‑1 (MQ=255)
acTTTTCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCAcc < 2:5516091/76‑1 (MQ=255)
ttttCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCgg < 2:5122316/76‑1 (MQ=255)
tttCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGa > 2:4926615/1‑76 (MQ=255)
tttCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGa < 2:1597317/76‑1 (MQ=255)
ttCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGAt < 2:4457524/76‑1 (MQ=255)
ttCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGAt < 2:1222883/76‑1 (MQ=255)
tCCGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATc < 2:3373022/76‑1 (MQ=255)
cGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCaa > 2:1814903/1‑76 (MQ=255)
cGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCaa > 1:3201190/1‑76 (MQ=255)
cGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCaa > 1:646302/1‑76 (MQ=255)
cGAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCaa > 1:6943755/1‑76 (MQ=255)
gAAATGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAat > 1:5578098/1‑76 (MQ=255)
aaaTGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAata > 2:650982/1‑76 (MQ=255)
aaTGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAatat < 2:6640629/76‑1 (MQ=255)
aaTGATGGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAatat < 1:5117761/76‑1 (MQ=255)
atgatgGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAacatc > 2:7644932/1‑75 (MQ=255)
atgatgGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATg > 1:4679155/1‑76 (MQ=255)
tgatgGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGc > 2:754225/1‑76 (MQ=255)
gatgGCGAAAAAACCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGcc < 1:5815895/76‑1 (MQ=255)
gatgGCGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGcc > 1:7107803/1‑76 (MQ=255)
tgGCAAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAg < 1:4250073/76‑1 (MQ=255)
cGAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGata < 1:4348587/76‑1 (MQ=255)
gAAAAAAACGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGatat < 2:294843/76‑1 (MQ=255)
aaaaaaaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATg > 2:1150150/1‑76 (MQ=255)
aaaaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATc < 2:4697037/76‑1 (MQ=255)
aaaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCg > 2:291595/1‑76 (MQ=255)
aaaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCg > 2:7206849/1‑76 (MQ=255)
aaaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCg < 1:6539776/76‑1 (MQ=255)
aaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCgg < 1:7581760/76‑1 (MQ=255)
aaCGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCgg > 1:7455353/1‑76 (MQ=255)
cGGGCCCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCGGCg > 2:1008289/1‑76 (MQ=255)
|
TGGCGAAATTATACTCCCCGAGTCCCCTTGCCCCTTCTGGACACTTTTCCGAAATGATGGCGAAAAAAACGGGACCCTTTGGCCCCGTTCTATTTATTAGTGAAATTACAATCTCACCGGATCAATATGCCAGATATGATCGGCGT > REL606/3495483‑3495628
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
