Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A118 F1 I1 R1
|
15 |
203.6 |
13305188 |
92.8% |
12347214 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,489,541 |
G→A |
S171S (AGC→AGT) |
glpG ← |
predicted intramembrane serine protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,489,541 | 0 | G | A | 98.4%
| 728.6
/ ‑1.0
| 190 | S171S (AGC→AGT) | glpG | predicted intramembrane serine protease |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (99/88); total (101/89) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 |
Only 100 of 200 total aligned reads displayed.
ACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGC > REL606/3489468‑3489613
|
aCGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACt < 1:4210108/76‑1 (MQ=255)
cGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTa < 2:2850655/76‑1 (MQ=255)
cGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTa < 2:4923180/76‑1 (MQ=255)
cGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTa < 1:2034823/76‑1 (MQ=255)
ggCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTAc > 2:6609327/1‑76 (MQ=255)
ggCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTAc > 2:6095494/1‑76 (MQ=255)
cccGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCg < 2:3088182/76‑1 (MQ=255)
ccGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGa < 2:1523456/76‑1 (MQ=255)
cGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAg > 1:1746884/1‑76 (MQ=255)
gCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAgg < 2:1297161/76‑1 (MQ=255)
gAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGt > 2:2905843/1‑76 (MQ=255)
aaTTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGtt < 2:135814/76‑1 (MQ=255)
aaTTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGtt < 2:1954780/76‑1 (MQ=255)
aTTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGttt > 1:5004038/1‑76 (MQ=255)
tttttGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGtttt < 2:3922290/76‑1 (MQ=255)
tttGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTc > 2:4432538/1‑76 (MQ=255)
ttGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTcc < 1:2275342/76‑1 (MQ=255)
tgctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCa < 1:2442733/76‑1 (MQ=255)
tgctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCa > 2:2216487/1‑76 (MQ=255)
tgctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCa < 2:6512510/76‑1 (MQ=255)
gctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCAc > 1:4837193/1‑76 (MQ=255)
ctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCAcc > 2:2995716/1‑76 (MQ=255)
ctgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCAcc > 2:2686243/1‑76 (MQ=255)
tgtacaTAGACGCTTAACAGGGGGATAATGACAGTAATAAGAATTAGCTTAAAGCTACCGAGGCGTTTTTCAACcg > 2:1603411/4‑76 (MQ=255)
tgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACcg > 1:4061532/1‑76 (MQ=255)
tgcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACcg < 2:3429237/76‑1 (MQ=255)
gcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACcgc > 1:4768954/1‑76 (MQ=255)
gcACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACcgc > 2:3394755/1‑76 (MQ=255)
acaTAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCgcgc > 2:1912735/1‑76 (MQ=255)
acaTAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCgcgc > 2:562341/1‑76 (MQ=255)
aTAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGcgccg > 1:4949101/1‑76 (MQ=255)
aTAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGcgccg > 2:6180853/1‑76 (MQ=255)
tAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACAGcgccgc > 2:4908798/1‑76 (MQ=255)
aGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCgccgcc > 2:1196615/1‑76 (MQ=255)
aGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCgccgcc < 2:5353865/76‑1 (MQ=255)
gCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCCCCGCGccgccg < 2:694458/76‑1 (MQ=255)
ccGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCga < 1:1157943/76‑1 (MQ=255)
gCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCgaga < 1:1014872/76‑1 (MQ=255)
ttAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATa < 1:984841/76‑1 (MQ=255)
ttAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATa > 1:6452828/1‑76 (MQ=255)
aaCAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATacc > 1:3950168/1‑76 (MQ=255)
aaCAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACAGAGGCGTTTTTCCACCGCGCCGCCGAGATacc > 2:5414810/1‑76 (MQ=255)
agcgggCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATacca < 2:2262360/73‑1 (MQ=255)
aCAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATacca < 1:2828987/76‑1 (MQ=255)
cAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATaccac > 2:244383/1‑76 (MQ=255)
aGGGCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATaccacc > 2:4505082/1‑76 (MQ=255)
gggCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATaccacca < 1:4588595/76‑1 (MQ=255)
gggCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATaccacca < 2:3946883/76‑1 (MQ=255)
ggCGCTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATaccaccac < 1:3689841/76‑1 (MQ=255)
cgcTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATAccaccacca > 2:2149381/1‑76 (MQ=255)
cgcTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATAccaccacca < 1:1727874/76‑1 (MQ=255)
cgcTAATGAGAGAAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATAccaccacca > 1:1495487/1‑76 (MQ=255)
gcTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCag < 1:4727638/76‑1 (MQ=255)
cTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCaga > 2:6419540/1‑76 (MQ=255)
cTAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCAACGCGCCGCCGACATACCACCGCCagc > 2:541777/1‑75 (MQ=255)
tAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCagag > 1:839333/1‑76 (MQ=255)
tAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCagag > 1:1665458/1‑76 (MQ=255)
tAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCagag < 1:4050255/76‑1 (MQ=255)
tAATGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCagag < 1:5499305/76‑1 (MQ=255)
aaTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGc < 1:6583637/76‑1 (MQ=255)
aaTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGc > 1:1446108/1‑76 (MQ=255)
aaTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGc < 2:1441138/76‑1 (MQ=255)
aaTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGc > 1:4273625/1‑76 (MQ=255)
aaTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGc > 2:2732433/1‑76 (MQ=255)
aTGAGATTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCa < 1:4133447/76‑1 (MQ=255)
aTGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGCTCCCACCACCAGAGCa > 1:5177750/1‑76 (MQ=255)
tGAGAGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAg > 2:4221993/1‑76 (MQ=255)
gagaGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAgg < 2:6558443/76‑1 (MQ=255)
gagaGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAgg > 1:182190/1‑76 (MQ=255)
gagaGTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAgg < 1:3839854/76‑1 (MQ=255)
agagTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGt > 2:5893977/1‑76 (MQ=255)
gagTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGtt < 2:3659879/76‑1 (MQ=255)
agTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCCCCACCAGAGCAGGTTa < 2:4768954/76‑1 (MQ=255)
gTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTaa < 1:4397640/76‑1 (MQ=255)
gTAATAACAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTaa < 2:5709567/76‑1 (MQ=255)
ataataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGTCGAGATACCACCACCAGAGCAGGTTaa < 1:3440737/75‑1 (MQ=255)
taataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTaaa > 1:1334702/1‑76 (MQ=255)
taataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTaaa > 1:5607064/1‑76 (MQ=255)
aataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAag > 2:772831/1‑76 (MQ=255)
aataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAag > 2:2322256/1‑76 (MQ=255)
aataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAag > 1:2750192/1‑76 (MQ=255)
aataaCAATTAGCTTACCACTACAGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAag < 1:5414810/76‑1 (MQ=255)
ataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAaga < 1:2226359/76‑1 (MQ=255)
ataaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAaga > 1:3108083/1‑76 (MQ=255)
taaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAagag > 1:3329017/1‑76 (MQ=255)
aaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAgg > 1:3574890/1‑76 (MQ=255)
aaCAATTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAgg < 1:6100585/76‑1 (MQ=255)
aaCAATGAGCTTACCCCCACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAgg < 1:5883238/76‑1 (MQ=255)
aaTTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGata > 1:5361771/1‑76 (MQ=255)
aaTTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGata < 1:4505082/76‑1 (MQ=255)
aaTTAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGata < 1:294373/76‑1 (MQ=255)
ttAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATg < 1:3723760/76‑1 (MQ=255)
tAGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGc > 2:4354636/1‑76 (MQ=255)
aGCTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCa > 2:5033309/1‑76 (MQ=255)
cTTACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATc > 1:192396/1‑76 (MQ=255)
ttACCACTAGCGAGGCGTTTTTCCACCTCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCa < 2:1735152/76‑1 (MQ=255)
ttACCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCa < 1:6534467/76‑1 (MQ=255)
aCCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGc > 2:331482/1‑76 (MQ=255)
aCCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGc > 1:4426498/1‑76 (MQ=255)
aCCACTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGc > 1:4981149/1‑76 (MQ=255)
|
ACGGCCCGCTGAATTTTTGCTGCACATAGCCGCTTAACAGGGCGCTAATGAGAGTAATAACAATTAGCTTACCGCTACCGAGGCGTTTTTCCACCGCGCCGCCGAGATACCACCACCAGAGCAGGTTAAAGAGGATATGCATCAGC > REL606/3489468‑3489613
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
