Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A134 F1 I1 R1
|
15 |
220.5 |
13917488 |
95.6% |
13305118 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,369,951 |
A→C |
T65P (ACC→CCC) |
orn → |
oligoribonuclease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,369,951 | 0 | A | C | 100.0%
| 785.7
/ NA
| 188 | T65P (ACC→CCC) | orn | oligoribonuclease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (82/106); total (82/106) |
Only 100 of 202 total aligned reads displayed.
GGCAGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCACCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTGGCAA > REL606/4369878‑4370023
|
gCAGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCcccc < 1:1539870/76‑1 (MQ=255)
gCAGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCcccc > 2:1784907/1‑76 (MQ=255)
cAGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCa > 1:4791196/1‑76 (MQ=255)
aGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCAt > 1:423480/1‑76 (MQ=255)
aGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCAt < 1:145326/76‑1 (MQ=255)
gAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATa < 1:1828599/76‑1 (MQ=255)
gAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATa < 2:45951/76‑1 (MQ=255)
aaGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATAc < 1:6521789/76‑1 (MQ=255)
aaGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATAc > 2:306388/1‑76 (MQ=255)
aaGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACATGCGCCCCCATAc > 2:3924034/1‑76 (MQ=255)
gggCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCg < 2:2557090/76‑1 (MQ=255)
ggCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGc > 1:4580365/1‑76 (MQ=255)
ccGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCa < 2:192097/76‑1 (MQ=255)
ccGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCa < 2:6126309/76‑1 (MQ=255)
ccGACCAGTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCa < 2:4725827/76‑1 (MQ=255)
cGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAg < 1:3521281/76‑1 (MQ=255)
gACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCAt > 1:930523/1‑67 (MQ=255)
gACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGc > 2:6244478/1‑76 (MQ=255)
ccATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCgg > 2:1590986/1‑76 (MQ=255)
ttGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCt > 1:2263207/1‑76 (MQ=255)
tGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTg < 2:6827212/76‑1 (MQ=255)
cAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGt < 1:5401241/76‑1 (MQ=255)
cAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGt < 2:318263/76‑1 (MQ=255)
cAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGt > 2:6930217/1‑76 (MQ=255)
cAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGt > 1:3934032/1‑76 (MQ=255)
cAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGt > 2:4893061/1‑76 (MQ=255)
aGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTa < 2:1467137/76‑1 (MQ=255)
aGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTa > 1:2349518/1‑76 (MQ=255)
tACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTaga < 1:5129582/76‑1 (MQ=255)
tACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTaga < 2:4015040/76‑1 (MQ=255)
tACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTaga < 2:4090405/76‑1 (MQ=255)
tACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTaga < 2:4701181/76‑1 (MQ=255)
tACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTaga > 2:749114/1‑76 (MQ=255)
acacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTagag > 2:531387/1‑76 (MQ=255)
acacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTagag < 2:5987125/76‑1 (MQ=255)
acacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTagag < 2:1206492/76‑1 (MQ=255)
acacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTagag > 2:1144851/1‑76 (MQ=255)
acacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTagag < 1:1186710/76‑1 (MQ=255)
cacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAgc < 2:5937556/76‑1 (MQ=255)
cacCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAgc > 1:6746476/1‑76 (MQ=255)
acCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAgcg > 2:2214257/1‑76 (MQ=255)
aGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGt > 2:3422158/1‑76 (MQ=255)
tCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGa < 1:1147820/76‑1 (MQ=255)
tCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGa < 1:466174/76‑1 (MQ=255)
ccGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGaa > 1:3070053/1‑76 (MQ=255)
ccGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGaa > 1:3000163/1‑76 (MQ=255)
ccGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGaa > 2:5561214/1‑76 (MQ=255)
cGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGaaa > 1:1025329/1‑76 (MQ=255)
cGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGaaa < 2:2935219/76‑1 (MQ=255)
gATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAg > 2:426829/1‑76 (MQ=255)
aTGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGc < 1:592259/76‑1 (MQ=255)
aTGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGc > 2:197682/1‑76 (MQ=255)
tGAACATCTGGCGCTGATGGATGACTGGAACGTTCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCg < 1:6138829/76‑1 (MQ=255)
tGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCg > 2:51388/1‑76 (MQ=255)
tGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCg < 2:2771126/76‑1 (MQ=255)
gAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGa < 2:1768926/76‑1 (MQ=255)
gAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGa > 2:4247158/1‑76 (MQ=255)
gAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGa < 2:241435/76‑1 (MQ=255)
aCAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGc > 1:257067/1‑76 (MQ=255)
cAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCa < 2:5422807/76‑1 (MQ=255)
cAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCa < 1:2093367/76‑1 (MQ=255)
cAGCTGGCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCa < 2:6538486/76‑1 (MQ=255)
ggCGCTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATg > 1:352590/1‑76 (MQ=255)
gcgcTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATgg < 1:2722464/76‑1 (MQ=255)
cgcTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATggg > 1:4027546/1‑76 (MQ=255)
cgcTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATggg > 1:3407036/1‑76 (MQ=255)
cgcTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATggg > 2:5822266/1‑76 (MQ=255)
gcTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGc > 1:491412/1‑76 (MQ=255)
cTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCg > 1:659501/1‑76 (MQ=255)
cTGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCg < 2:5071717/76‑1 (MQ=255)
tGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGa > 1:995041/1‑76 (MQ=255)
tGATGGATGACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGa > 2:4448928/1‑76 (MQ=255)
gatggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGAt > 2:227693/1‑76 (MQ=255)
atggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATc > 2:2328480/1‑76 (MQ=255)
atggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATc > 1:4987578/1‑76 (MQ=255)
tggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATca < 2:2669341/76‑2 (MQ=255)
tggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCg < 1:5652362/76‑1 (MQ=255)
ggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCgg < 1:1304237/76‑1 (MQ=255)
ggatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCgg < 1:5725199/76‑1 (MQ=255)
gatgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCggg < 1:5866994/76‑1 (MQ=255)
atgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGa < 2:6393458/76‑1 (MQ=255)
tgACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGaa > 2:2225177/1‑76 (MQ=255)
taCTGGACCGTGCGCCCCAATCCCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAg < 2:4813335/75‑1 (MQ=255)
gACTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAg < 1:5545285/76‑1 (MQ=255)
aCTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGTTCGGGAAGc > 2:601041/1‑76 (MQ=255)
aCTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGc > 2:5497575/1‑76 (MQ=255)
cTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGTGAAGCt > 2:1403535/1‑76 (MQ=255)
cTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCt > 1:4362776/1‑76 (MQ=255)
cTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCt < 1:2620571/76‑1 (MQ=255)
cTGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCt > 1:549244/1‑76 (MQ=255)
tGGAACGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTg < 1:2507701/76‑1 (MQ=255)
aCGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACt < 1:77615/76‑1 (MQ=255)
cGTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTg < 1:4654698/76‑1 (MQ=255)
gTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTgg < 2:4821325/76‑1 (MQ=255)
gTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTgg < 1:2873891/76‑1 (MQ=255)
gTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTgg > 1:211856/1‑76 (MQ=255)
gTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTgg > 2:344416/1‑76 (MQ=255)
gTGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTgg < 1:190858/76‑1 (MQ=255)
tGCGCCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTGGc < 1:6264524/76‑1 (MQ=255)
gcgcCCCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTGGCa < 2:3709153/76‑1 (MQ=255)
|
GGCAGAAGGGCCGACCATTGCAGTACACCAGTCCGATGAACAGCTGGCGCTGATGGATGACTGGAACGTGCGCACCCATACCGCCAGCGGGCTGGTAGAGCGCGTGAAAGCGAGCACGATGGGCGATCGGGAAGCTGAACTGGCAA > REL606/4369878‑4370023
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
