Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,375,781 |
(TGGCGC)3→2 |
coding (215‑220/1848 nt) |
mutL → |
DNA mismatch repair protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
4375773 = | 3 (0.020) | 97 (0.630) |
60/122 |
1.5 |
97.3% |
coding (207/1848 nt) |
mutL |
DNA mismatch repair protein |
| ? | REL606 |
= 4375766 |
3 (0.020) | coding (200/1848 nt) |
mutL |
DNA mismatch repair protein |
Only 100 of 151 total aligned reads displayed.
GCGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4375861‑4375773
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgccagcTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < REL606/4375766‑4375692
CGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGC < 1:1049929/76‑1
CGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGC > 2:1794173/1‑76
GCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCG < 1:3515518/76‑1
CTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGCGGCGATTTTTCTGGTGGGATGGCGCGCC > 1:3215300/1‑76
TCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCA < 1:504567/76‑1
TCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCA < 1:4880295/76‑1
CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGGTTTTACTGGTGGGATGACGCGCCAG > 1:321593/1‑76
CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGGCAG > 1:4926790/1‑76
CACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCcg > 1:1753469/1‑74
ACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGC < 2:26063/76‑1
GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 2:1890712/76‑1
GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 1:4724017/76‑1
GCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCC < 1:360481/76‑1
CGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGGCAGCGCCc > 1:1193036/1‑75
CGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCA < 1:5725752/76‑1
GAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAG < 1:2252710/76‑1
GAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAG < 1:1392024/76‑1
AAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC < 1:608216/76‑1
AAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCT > 1:4224639/1‑76
AGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGGATGACCCGCCCGCGCCAGCTC > 2:5662501/1‑76
CCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTC < 1:5432397/76‑1
CAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGGATGACGCGCCAGCGCCAGCTCGTCT > 1:4551020/1‑76
CTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTT > 1:2071981/1‑76
TGATAATGGCTTCGGGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:2535789/1‑76
TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:2695822/1‑76
TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT < 2:1626227/76‑1
TGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTT > 1:3783335/1‑76
GATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTG < 2:1402452/76‑1
GATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTG < 1:1876065/76‑1
ATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCCGCGCCCGCTCGTCTTTTTTGA > 1:5754704/1‑76
TAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCCTGACGCGCCAGCGCCCGCTCGTCTTTTTTttt > 2:1001697/1‑73
TAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGAT < 1:4671720/76‑1
AATTGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 1:6225424/76‑1
AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 1:5831346/76‑1
AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 2:5246217/76‑1
AATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATA < 2:4629551/76‑1
GGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATTCCG > 2:4585638/1‑76
CTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCCCA > 2:5268052/1‑76
TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCCTGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG > 2:1002395/1‑76
TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG < 1:6156024/76‑1
TTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAG > 1:3142906/1‑76
CGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACCCGCCAGCGCCAGCTCGCCTTTTTTGATACCGCAGgc > 2:2515823/1‑74
GAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCG < 1:2113606/76‑1
GAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCG > 2:796580/1‑76
TCGTCCAGAGAGGCGATTTTCCTGGTGGCATGCCGCCCGCGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTAT < 2:4468458/76‑1
GTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTTTTTTTTGATACCGCAGCCGTTATta > 1:6059810/1‑74
TCCAGAGAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCAC < 1:3785286/76‑1
CAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGA > 1:800484/1‑76
AGAGAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA < 1:1366147/76‑1
AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATTACGAA > 2:940412/1‑76
AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA > 1:3483140/1‑76
AGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAA > 1:4318796/1‑76
AGAGGCGATTTTACTGGTGGCAAGACCCGCCAGCTCCAGGTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATG > 2:1553323/1‑76
GAGGCGATTTTACTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGC < 1:3072543/76‑1
GGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAAAGCGG > 2:5565421/1‑76
CGATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGGTATCACGAATGCGGAT > 2:623438/1‑76
CGATTTGACGGGTGGCGTGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGAT < 1:5222912/76‑1
GATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATA > 1:5537680/1‑76
ATTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAA < 1:6276513/76‑1
TTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAG > 1:4461549/1‑76
TTTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGGCTTTTTTGATACCGCAGCCGCTATCACGAATGCGGATAAG > 2:2927548/1‑76
TTTAACGGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAG < 1:611331/76‑1
TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATTCGGATAAGT > 1:426412/1‑76
TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGT > 1:2632604/1‑76
TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGT > 1:2212342/1‑76
TTTACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGGTATCACGAATGCGGATAAGT > 2:2213521/1‑76
ACTGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTC < 2:5316138/76‑1
cgGGTGGCATGCCCCGCCAGCCCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCG < 2:4608274/74‑1
CTGGTGGCATGCCGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCG < 1:1182583/76‑1
TGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGC > 1:6021012/1‑76
TGGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGC < 1:5409096/76‑1
GGTGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGGTTCGCC > 1:3394534/1‑76
TGGCATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCC > 2:5359485/1‑76
ATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCG > 2:337978/1‑76
ATGACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGGTTCGCCCCACCG > 2:5605868/1‑76
gcCGCCCCTGCGCCAGCTTGTCTTTTTTGCCACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCG < 1:3953394/74‑1
GACGCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCG > 1:1013690/1‑76
CGCCCCAGCGCCAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTT < 1:2813136/76‑1
GCGCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTC > 2:768940/1‑76
GCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGA > 2:28626/1‑76
GCCAGCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGA > 1:1516915/1‑76
GCGCCGGCTCGTCTTTTTTGATACCCCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATC < 2:3949773/76‑1
GCGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATC > 2:257821/1‑76
ccCCATCTCGTCTTTTTTGACACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA < 2:3361439/74‑1
CGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA > 2:3641170/1‑76
CGCCAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCA < 1:5339558/76‑1
CAGCTCGTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA < 1:435232/76‑1
CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 1:2573958/1‑76
CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 2:5023499/1‑76
CAGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATA > 2:5004095/1‑76
cGCTCGTTTTTTTTGTTACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:5409711/75‑1
acCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:5211382/74‑1
AGCTCGTTTTTTTTCATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:277210/76‑1
AGCTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 2:3142906/76‑1
AGCTCGTCTTTTTGGAGCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATAT < 1:6097521/76‑1
CTCTTCTTTTTTGATCCCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < 1:5876333/76‑1
CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 1:3960811/1‑76
CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 1:1455470/1‑76
CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 2:2786039/1‑76
CTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG > 2:1312201/1‑76
GCGCCTCACCGCGAAAGCCCAGGCTGATAATGGCTTCGAGATCGTCCAGAGAGGCGATTTTACTGGTGGCATGACGCGCCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4375861‑4375773
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagcgccagcTCGTCTTTTTTGATACCGCAGCCGTTATCACGAATGCGGATAAGTTTCGCCCCACCGCGTTCGATATCAATATCG < REL606/4375766‑4375692
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
