Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A32 F1 I1 R1
|
13 |
41.3 |
2638873 |
95.5% |
2520123 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,512,434 |
Δ6 bp |
intergenic (‑176/‑152) |
yhhX ← / → yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3512433 | 3 (0.070) | 49 (1.190) |
34/150 |
0.2 |
96.1% |
intergenic (‑175/‑158) |
yhhX/yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
| ? | REL606 |
3512440 = |
1 (0.020) | intergenic (‑182/‑151) |
yhhX/yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
TGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3512360‑3512433
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTT > REL606/3512440‑3512514
TGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCA > 2:783344/1‑76
TGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCA > 2:783323/1‑76
tAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAG > 2:962110/2‑76
GAGAACGAACGATCAAAAAAAAANCCAGCNCCCGGTTGGCTAAGNAATACTCGAAGCAATGTGAGCAATGTCGCAG > 2:168939/1‑76
GAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTC < 1:350240/76‑1
AAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCG < 1:1139354/76‑1
GATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCG < 1:1284246/76‑1
GATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCG < 2:105738/76‑1
TCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAG > 1:329948/1‑76
CAAATAGAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGG > 1:77889/1‑76
nAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCANGTTCTCCGCGAGGG > 2:183289/2‑76
AAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCT > 2:796210/1‑76
AAAAAAGCCAGCACCCGACTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTAGCAGGTCCTCCGCGAGGGTCT > 2:203356/1‑76
AAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTC > 2:988307/1‑76
AGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTG < 1:134877/76‑1
AGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTG < 1:710481/76‑1
AGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGACCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTG > 1:856928/1‑76
GCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGA > 2:525636/1‑76
CCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGAT < 2:143639/76‑1
CAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATC < 2:866019/76‑1
gCCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGA > 1:1288925/2‑76
ACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGA > 1:1109404/1‑76
ACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGA > 1:1288918/1‑76
ACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGA > 1:390430/1‑76
ACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGA > 1:311901/1‑76
CCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAG > 1:1030243/1‑76
CCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAG < 2:841063/76‑1
CCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGA < 2:679474/76‑1
GGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACA > 1:793491/1‑76
GGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAA > 2:862383/1‑76
GGCTAAGCAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAA > 2:862374/1‑76
GCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAAT < 2:403428/76‑1
TAAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAA > 1:592955/1‑76
AAGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAAT > 1:337705/1‑76
AGTAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATC > 1:1108489/1‑76
TAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCAT > 2:29881/1‑76
TAATACTGGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCAT > 1:403783/1‑76
ACTGGAAGCAATGTGAGAAATGGCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTC > 2:194209/1‑76
GGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATT < 2:586043/76‑1
GGAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATT < 2:1023114/76‑1
GAAGCAATGTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTC > 2:756038/1‑76
GTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGT < 2:537224/76‑1
GTGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGT < 1:483843/76‑1
TGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTC > 1:862586/1‑76
TGAGCAATGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTC > 1:583394/1‑76
TGTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACT < 1:676787/76‑1
GTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTT > 1:245414/1‑76
GTCGCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACNTGTCCAACACTT < 1:19081/76‑1
GCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTT < 2:568537/76‑1
TGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3512360‑3512433
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTT > REL606/3512440‑3512514
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
