Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F1 I1 R1
|
14 |
40.5 |
2605368 |
96.4% |
2511574 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,404,024 |
T→C |
C11R (TGC→CGC) |
rpsR → |
30S ribosomal protein S18 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,404,024 | 0 | T | C | 100.0%
| 209.3
/ NA
| 51 | C11R (TGC→CGC) | rpsR | 30S ribosomal protein S18 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (23/28); total (23/28) |
GCAGATTGAATTGATAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCG > REL606/4403959‑4404096
|
gCAGATTGAATTGATAGATNCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCAc > 1:1218081/1‑76 (MQ=255)
cAGATTGAATTGATAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCAcc < 2:887248/76‑1 (MQ=255)
aGATTGAATTGATAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACcg > 2:522567/1‑76 (MQ=255)
aGATTGAATTGATAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACcg > 2:51841/1‑76 (MQ=255)
attgaattgaTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACcgcg < 2:820764/76‑1 (MQ=255)
tgaattgaTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGa < 2:1153176/76‑1 (MQ=255)
tgaattgaTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGa > 2:749734/1‑76 (MQ=255)
aattgaTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAACTTCCGCCGTTTCACCGCGGAAg > 1:355570/1‑76 (MQ=255)
ttgaTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGc > 1:466779/1‑76 (MQ=255)
aTAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGtt < 2:947003/76‑1 (MQ=255)
tCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAagag < 1:559210/76‑1 (MQ=255)
tCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAagag < 2:345047/76‑1 (MQ=255)
tGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGAt < 2:840389/76‑1 (MQ=255)
gagaTTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCg < 2:895/76‑1 (MQ=255)
gagaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCg < 2:722259/76‑1 (MQ=255)
gagaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCg < 2:233787/76‑1 (MQ=255)
agaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTTACCGCGGAGGGCGTTCAAGAGATCgc > 2:374813/1‑75 (MQ=255)
agaCTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGa > 2:1029043/1‑76 (MQ=255)
tAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACtat < 1:213958/76‑1 (MQ=255)
gCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATaa < 1:456688/76‑1 (MQ=255)
cATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAg < 2:459323/76‑1 (MQ=255)
cATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAg > 2:222493/1‑76 (MQ=255)
cATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAg < 1:83363/76‑1 (MQ=255)
cATATGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGACATCGACTATAAAg < 1:83383/76‑1 (MQ=255)
atatGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGa > 2:576458/1‑76 (MQ=255)
atGGCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGata > 2:967428/1‑76 (MQ=255)
gCACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCg < 1:544235/76‑1 (MQ=255)
cACGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGc > 2:419966/1‑76 (MQ=255)
aCGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCt < 2:1015171/76‑1 (MQ=255)
aCGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCt < 2:793470/76‑1 (MQ=255)
cGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTa < 1:753448/76‑1 (MQ=255)
cGTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTa < 2:902318/76‑1 (MQ=255)
gTTATTTCCGTCGTCGCAAGTTCCGCCGTTTCATCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTAc > 1:213121/1‑76 (MQ=255)
ttATTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACg > 2:560683/1‑76 (MQ=255)
aTTTCCGTCGTCGCAAGTTCCGCCGTTTCACCGCGGTAGGCGTTCAAGAGATCGACTATAAANATATCGCTACCCt > 1:162449/1‑76 (MQ=255)
ccGTNGTCGCAAGTTCCGCCGTTGCACCCCGTTAGGCGTNCAAGAGATCGACTATAAAGATATCGCTACGCTGaaa < 1:153981/76‑1 (MQ=255)
ccGTCGTCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGaaa < 1:638085/76‑1 (MQ=255)
cgtcgtCGCAAGTTCCGCCGTTTGACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGaaaa < 1:1111206/76‑1 (MQ=255)
cgtcgtCGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGaaaa < 1:572201/76‑1 (MQ=255)
gtcgtcGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGaaaaa > 1:217223/1‑76 (MQ=255)
gtcgtcGCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGaaaaa > 1:360579/1‑76 (MQ=255)
tcgtcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAAc > 2:330807/1‑76 (MQ=255)
cgtcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGGCTATAAAGATATCGCTACGCTGAAAAACt < 1:466678/76‑1 (MQ=255)
cgtcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTNCGCTGAAAAACt < 1:20207/76‑1 (MQ=255)
cgtcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACt > 2:50465/1‑76 (MQ=255)
cgtcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACt > 2:387765/1‑76 (MQ=255)
tcgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTAc < 2:613524/76‑1 (MQ=255)
tcgCAAGTCCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTAc < 2:613544/76‑1 (MQ=255)
cgCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACa > 1:627567/1‑76 (MQ=255)
gCAAGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACAt > 1:553814/1‑76 (MQ=255)
aGTTCCGCCGTTTCACCGCGGAAGGCGTTCAAGNGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCAc > 2:1105529/1‑76 (MQ=255)
ttCCGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCg < 1:122757/76‑1 (MQ=255)
|
GCAGATTGAATTGATAGATTCTGGAGACTAGCCATATGGCACGTTATTTCCGTCGTCGCAAGTTCTGCCGTTTCACCGCGGAAGGCGTTCAAGAGATCGACTATAAAGATATCGCTACGCTGAAAAACTACATCACCG > REL606/4403959‑4404096
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
