Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A68 F1 I1 R1
|
17 |
56.4 |
3914180 |
96.2% |
3765441 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
1,821,482 |
IS150 (+) +3 bp |
coding (616‑618/1041 nt) |
ynjI ← |
predicted inner membrane protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
664688 = | NA (NA) | 76 (1.280) |
54/146 |
0.1 |
97.3% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 1821484 |
2 (0.040) | coding (616/1041 nt) |
ynjI |
predicted inner membrane protein |
| * |
? |
REL606 |
1821482 = | 2 (0.030) | 65 (1.060) |
47/150 |
0.2 |
96.9% |
coding (618/1041 nt) |
ynjI |
predicted inner membrane protein |
| ? | REL606 |
2774435 = |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664764‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAATCATAGC < REL606/1821484‑1821410
CTTTTCAAAAGGGTATTTTGGCTTTGACATGTTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:844946/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1087067/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1757434/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1237745/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1930296/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 1:883263/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 2:665540/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 1:1237863/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1470575/1‑76
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGA > 1:739511/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAG < 1:1477493/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGC < 1:1628505/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGC > 2:626764/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCA > 2:1525859/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCA > 2:1144871/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGG < 1:1603586/76‑1
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGG > 2:335789/1‑76
AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGT > 2:1453190/1‑76
AGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGT > 2:755054/1‑76
GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTT < 1:188899/76‑1
GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTA < 2:656760/76‑1
GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTAT < 2:1440391/76‑1
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATC < 1:186846/76‑1
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAACATGGGTGCAGTACAGAGCAGGGTATCGC > 1:236795/1‑76
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCg < 2:53749/76‑2
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCn < 1:1193849/76‑2
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCT > 2:1156574/1‑76
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCT < 2:1500124/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTT > 2:1327652/1‑76
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTT < 2:1135777/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTT > 1:579651/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTG > 1:1460356/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTG > 2:154588/1‑76
GCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGT > 2:895162/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTT < 1:372329/76‑1
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTT > 1:471988/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTT > 2:260323/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAA < 1:1239747/76‑1
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAA > 1:1880287/1‑76
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAAT < 1:1187559/76‑1
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAAT < 2:624216/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATA < 1:7983/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAA < 2:321252/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAA < 1:283267/76‑1
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAA > 1:187813/1‑76
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATT > 1:915215/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTG > 1:1887737/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGGAGTACAGAGCAGGGTATCGGCTTGTTGAATAAATTTGg > 2:951409/1‑75
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGC > 2:1163217/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGC > 2:951383/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGC > 2:1448302/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGC > 1:421687/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCCTGTTGAATAAATTTGCT > 2:827073/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGAAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCT < 1:67458/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTT < 2:1651279/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTT > 1:182008/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTT > 1:640023/1‑76
TATCCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTT > 1:1942710/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTC > 2:904962/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCC < 2:167387/76‑1
CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCT > 1:49807/1‑76
CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCT > 1:266384/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTC < 1:1156574/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAG > 1:1688004/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGA > 2:845562/1‑76
ATCGTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACT > 2:808809/1‑76
GTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATA < 2:1541970/76‑1
GTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATA > 1:528616/1‑76
GTCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATA > 1:701061/1‑76
TCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATAT < 2:460622/76‑1
TCCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATAT < 2:572402/76‑1
CCAACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATC > 1:1352640/1‑76
ACAAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCT < 2:1859819/76‑1
AAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGA > 1:1160817/1‑76
AAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGA > 1:1333407/1‑76
AAAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGA > 2:1629278/1‑76
AAATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGAT > 1:380703/1‑76
AATGGGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATT < 1:626764/76‑1
GGTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGC < 1:1063772/76‑1
GTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCT > 1:281792/1‑76
GTGCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCT > 2:1671316/1‑76
GCAGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTAGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAA > 2:1905086/1‑76
AGTACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAATC > 2:622214/1‑76
TACAGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAATCAT > 2:280923/1‑76
AGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAATCATAGC < 1:77830/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664764‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGAGCAGGTTATCGCCTTGTTGAATAAATTTGCTGTTTTTCCCTCAGACTATATCTCTGATTGCGCTAATCATAGC < REL606/1821484‑1821410
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
