Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F1 I1 R1
|
15 |
45.6 |
2893554 |
96.7% |
2798066 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,097,357 |
(CAATG)2→3 |
coding (216/846 nt) |
glpF ← |
glycerol facilitator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
4097348 = | 3 (0.070) | 37 (0.870) |
32/140 |
0.3 |
95.1% |
coding (225/846 nt) |
glpF |
glycerol facilitator |
| ? | REL606 |
= 4097352 |
1 (0.020) | coding (221/846 nt) |
glpF |
glycerol facilitator |
CTGGGGGTGGCAATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4097425‑4097348
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTTTCT < REL606/4097352‑4097278
CTGGGGGTGGCAATGGCCATCTACCTGACCGCAGGGGTTTCCTGCGCGCATCTTAATCCCGCTGTTACCGTTGCAT > 2:1413866/1‑76
GGGGTGGCAATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGC < 1:265386/76‑1
GGTGGCAATGGCCATCTGCCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCAT < 1:160933/76‑1
TGGCAATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTG > 2:1333567/1‑76
CAATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGG > 2:812003/1‑76
ATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCT < 2:813424/76‑1
ATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCT > 1:495049/1‑76
CCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTT < 1:243906/76‑1
CTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTT < 1:1390658/76‑1
CTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTT < 1:996346/76‑1
GACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCG > 1:903427/1‑76
CGCAGGGGTTTCNGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACA > 1:13576/1‑76
CAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAG < 2:1056947/76‑1
CAGGGGTCTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGATTGCCTGTTTCGACAAG < 1:74837/76‑1
GGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGC < 2:1060879/76‑1
GTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAA > 1:1151845/1‑76
TTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAG > 2:121524/1‑76
CGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTA < 1:1175670/76‑1
GCGCGCATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATT < 1:623464/76‑1
CATCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTT < 2:887336/76‑1
TCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTA < 1:696199/76‑1
TCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTA < 2:296239/76‑1
TCTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTA < 1:265540/76‑1
CTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTAT > 2:282802/1‑76
CTTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTNCGACAAGCGCAAAGTTATTCCTTTTAT < 1:1440913/76‑1
TTAATCCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATC > 1:139119/1‑76
CCCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTC < 1:800269/76‑1
CCGCTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCA < 1:1020425/76‑1
CTGTTACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAA < 2:361459/76‑1
GTTACCATTGCATTGCACTGTGACTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTAATCGTTTCACAAGT > 2:218512/1‑76
GTTACCATTGCATCGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGT > 1:100096/1‑76
TACCATTGCATTGCATTGTNGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTATATCGTTTCACAAGTTG > 1:1345747/1‑76
TACCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTG < 2:454316/76‑1
CCATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCC > 2:926360/1‑76
CATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCG < 1:711444/76‑1
CATTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCG > 1:1404540/1‑76
TTGCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGC > 1:641414/1‑76
GCATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGC > 1:726925/1‑76
ATTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCCCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTT > 1:519104/1‑76
TTGCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTTT < 2:152342/76‑1
GCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTTTCT > 2:268854/1‑76
GCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTTTCT < 2:965355/76‑1
CTGGGGGTGGCAATGGCCATCTACCTGACCGCAGGGGTTTCCGGCGCGCATCTTAATCCCGCTGTTACCATTGCATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4097425‑4097348
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattgCATTGTGGCTGTTTGCCTGTTTCGACAAGCGCAAAGTTATTCCTTTTATCGTTTCACAAGTTGCCGGCGCTTTCT < REL606/4097352‑4097278
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
