mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 787,879 | Δ12,090 bp | ECB_00726–ECB_00739 | ECB_00726, ECB_00727, ECB_00728, ECB_00729, ECB_00730, ECB_00731, ECB_00732, ECB_00733, ECB_00734, ECB_00735, ECB_00736, ECB_00737, ECB_00738, ECB_00739 | |
| RA | 1,305,009 | C→G | D411H (GAT→CAT) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,512,503 | C→T | intergenic (‑245/‑88) | yhhX ← / → yhhY | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,343 | G→A | A43T (GCA→ACA) | rho → | transcription termination factor Rho |
| JC | 4,097,357 | (CAATG)2→3 | coding (216/846 nt) | glpF ← | glycerol facilitator |
| RA | 4,108,507 | T→G | intergenic (‑5/‑272) | metJ ← / → metB | transcriptional repressor protein MetJ/cystathionine gamma‑synthase |
| RA | 4,164,088 | A→G | K1078R (AAG→AGG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,202,085 | Δ2 bp | coding (474‑475/825 nt) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2032125–2032176 | 2055448–2055366 | 23191–23324 | 15 [14] | [14] 15 | [manB]–[cpsG] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ,[cpsG] |