Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A135 F1 I1 R1
|
14 |
200.0 |
12709596 |
94.6% |
12023277 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,496,226 |
C→A |
intergenic (‑134/‑133) |
ansP ← / → yncG |
L‑asparagine transporter/predicted enzyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,496,226 | 0 | C | A | 98.9%
| 1180.7
/ ‑1.6
| 281 | intergenic (‑134/‑133) | ansP/yncG | L‑asparagine transporter/predicted enzyme |
| Reads supporting (aligned to +/- strand): ref base C (0/3); new base A (132/146); total (132/149) |
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 285 total aligned reads displayed.
ATCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATCGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATCC > REL606/1496153‑1496298
|
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 2:1274842/76‑1 (MQ=255)
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa > 2:555740/1‑76 (MQ=255)
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 1:1172715/76‑1 (MQ=255)
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 2:4451511/76‑1 (MQ=255)
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa < 1:2467072/76‑1 (MQ=255)
aTCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGa > 1:2184471/1‑76 (MQ=255)
tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt < 1:1506584/76‑1 (MQ=255)
tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt < 1:4138997/76‑1 (MQ=255)
tCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGAt > 2:802102/1‑76 (MQ=255)
ccTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATa > 2:2781033/1‑76 (MQ=255)
ccTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATa < 1:404840/76‑1 (MQ=255)
cTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaa < 1:1475367/76‑1 (MQ=255)
cTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaa > 2:749531/1‑76 (MQ=255)
tGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaaa < 2:244084/76‑1 (MQ=255)
tGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATaaa < 1:383632/76‑1 (MQ=255)
ggCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAAc > 1:3128742/1‑76 (MQ=255)
cGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGa < 1:1897561/76‑1 (MQ=255)
gatgatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGAt > 2:4649868/1‑76 (MQ=255)
atgatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATg < 2:2421801/76‑1 (MQ=255)
gatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCa > 1:1707676/1‑76 (MQ=255)
gatAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCa < 1:1119750/76‑1 (MQ=255)
tAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCaaa < 2:5567906/76‑1 (MQ=255)
aGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCaaaa < 1:5828882/76‑1 (MQ=255)
ttATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACa > 1:5059736/1‑76 (MQ=255)
tATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACAt > 1:2956297/1‑76 (MQ=255)
aTCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATc > 1:3049539/1‑76 (MQ=255)
cACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATccc > 1:2661619/1‑76 (MQ=255)
ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:4863047/76‑1 (MQ=255)
ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:3626313/76‑1 (MQ=255)
ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 1:2377146/76‑1 (MQ=255)
ccATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCt < 2:89896/76‑1 (MQ=255)
cATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCtt < 1:2348948/76‑1 (MQ=255)
attattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTa < 1:4463768/76‑1 (MQ=255)
ttattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTAc > 1:3720660/1‑76 (MQ=255)
ttattCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTAc > 1:6114884/1‑76 (MQ=255)
attCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACaa < 2:4278520/76‑1 (MQ=255)
ttCTTTTTGGGTATTAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAAt > 2:1630268/1‑76 (MQ=255)
tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc > 1:5775630/1‑76 (MQ=255)
tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc > 1:1004462/1‑76 (MQ=255)
tCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATc < 1:3768435/76‑1 (MQ=255)
ttttGTGGGAATAAAACTATCGGAGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATcc < 2:5742287/75‑1 (MQ=255)
cTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATcc > 1:4942743/1‑76 (MQ=255)
ttATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTg > 1:4728465/1‑76 (MQ=255)
aTGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGaa < 1:5865846/76‑1 (MQ=255)
aTGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGaa > 1:3507835/1‑76 (MQ=255)
tGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAg > 2:1982352/1‑76 (MQ=255)
gggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgg > 2:599920/1‑76 (MQ=255)
gggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgg > 1:1246378/1‑76 (MQ=255)
ggTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAggg < 2:2518907/76‑1 (MQ=255)
gTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgggg < 2:5810947/76‑1 (MQ=255)
gTATAAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAgggg < 1:716638/76‑1 (MQ=255)
tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 1:4851299/76‑1 (MQ=255)
tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 2:149036/76‑1 (MQ=255)
tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa < 1:1363699/76‑1 (MQ=255)
tataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGa > 1:3675220/1‑76 (MQ=255)
ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGCAGGGGaa > 2:4983742/1‑76 (MQ=255)
ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaa > 2:3285018/1‑76 (MQ=255)
ataAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaa > 1:6256324/1‑76 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat > 2:2455682/1‑76 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat > 2:1347074/1‑76 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:1036915/76‑1 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5257431/76‑1 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:4203452/76‑1 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:6333448/76‑1 (MQ=255)
taAAACTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5290607/76‑1 (MQ=255)
caaagCTGTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaat < 1:5824030/75‑1 (MQ=255)
aaaaCTATCGGCCCAGCTTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaata < 1:554463/76‑1 (MQ=255)
aaccTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaataa < 1:282419/73‑1 (MQ=255)
aaCTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGaataat > 1:5151052/1‑76 (MQ=255)
aCTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAataata < 1:440670/76‑1 (MQ=255)
cTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATAc > 1:3352847/1‑76 (MQ=255)
cTATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATAc > 2:1695828/1‑76 (MQ=255)
tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa < 2:5355523/76‑1 (MQ=255)
tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa > 1:836939/1‑76 (MQ=255)
tATCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACa > 1:4225837/1‑76 (MQ=255)
aTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGACTAATACaa > 2:4570425/1‑76 (MQ=255)
aTCGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACaa < 1:3412167/76‑1 (MQ=255)
aTCGGCGCAGCATCCTACCCGTAATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACac > 2:6128567/1‑75 (MQ=255)
cGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACt > 1:317257/1‑76 (MQ=255)
cGGCGCAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACt > 1:2027618/1‑76 (MQ=255)
gcgcAGCATCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGa < 2:1137559/76‑1 (MQ=255)
gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 2:3422899/76‑1 (MQ=255)
gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 1:2784178/76‑1 (MQ=255)
gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg > 2:3123207/1‑76 (MQ=255)
gcagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACg < 1:5460420/76‑1 (MQ=255)
cagcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGa < 2:3839060/76‑1 (MQ=255)
agcaTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGaa > 1:645841/1‑76 (MQ=255)
caTCCTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGaaaa > 2:2050580/1‑76 (MQ=255)
ccTACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAAt > 1:3861727/1‑76 (MQ=255)
tACCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGa < 1:5945909/76‑1 (MQ=255)
aCCCGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGAc < 2:4535303/76‑1 (MQ=255)
cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:4341705/76‑1 (MQ=255)
cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:3522518/76‑1 (MQ=255)
cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:5206920/76‑1 (MQ=255)
cccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACa < 1:2292264/76‑1 (MQ=255)
ccGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACaa > 1:255915/1‑76 (MQ=255)
cGTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACaaa < 1:4162655/76‑1 (MQ=255)
gTTATAGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAAt < 2:1063035/76‑1 (MQ=255)
tataGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATcc > 1:4502895/1‑76 (MQ=255)
tATCGATAAACGATGCAAAACATCCCCATACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATcc < 1:6354583/76‑1 (MQ=255)
|
ATCCTGGCGATGATAGTTATCACCATTATTCTTTATGGGTATAAAACTATCGGCGCAGCATCCTACCCGTTATCGATAAACGATGCAAAACATCCCCTTACAATCCTGAAGGGGAATAATACAACTGACGAAAAAATGACAAATCC > REL606/1496153‑1496298
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
