Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A39 F1 I1 R1 15 59.3 3695894 97.1% 3588713 75.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 4,097,266 Δ13 bp coding (295‑307/846 nt) glpF ← glycerol facilitator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4097266 4097278 13 61 [0] [0] 61 glpF glycerol facilitator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 40972650 (0.000)59 (1.010) 42/148 0.3 100% coding (308/846 nt) glpF glycerol facilitator
?REL606 4097279 = 0 (0.000)coding (294/846 nt) glpF glycerol facilitator

GATK/CNVnator alignment

N/A