Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F1 I1 R1
|
18 |
50.6 |
3235256 |
96.4% |
3118786 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,498,251 |
G→A |
L413F (CTT→TTT) |
glgA ← |
glycogen synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,498,251 | 0 | G | A | 100.0%
| 167.5
/ NA
| 47 | L413F (CTT→TTT) | glgA | glycogen synthase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (19/28); total (19/28) |
CGAATAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAGGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGCGTACCGTA > REL606/3498181‑3498323
|
cGAATAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTtct > 2:124694/1‑76 (MQ=255)
gAATAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACCNACNCACTGGCGACGCCANCTGCAAAGTtctc > 2:1451939/1‑76 (MQ=255)
gAATAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTtctc < 2:767494/76‑1 (MQ=255)
aaTAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCa > 2:1416841/1‑76 (MQ=255)
tAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAag > 2:137452/1‑76 (MQ=255)
aGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAaga < 1:443882/76‑1 (MQ=255)
gCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAagag < 1:714884/76‑1 (MQ=255)
ttAACAGCGTCCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACa < 2:555366/75‑1 (MQ=255)
gTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACa < 1:1164297/76‑1 (MQ=255)
tAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGCCAACGCCATCTGCAAGGTTCCCAAGAGACCAg > 2:957298/1‑76 (MQ=255)
naCAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTNCTCAAGAGAACAGt > 2:231493/2‑76 (MQ=255)
aaCAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGt > 1:1080816/1‑76 (MQ=255)
aaCAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGt > 2:1033469/1‑76 (MQ=255)
aCAGCGACCAGGCANTACTATCTTCAAATACAAANCCACTTGCNACGCCATCTGCAAAGTTCTAAAGAGAACAgcc < 2:1331835/76‑3 (MQ=255)
cAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCa < 1:1048475/76‑1 (MQ=255)
cAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCa < 1:559640/76‑1 (MQ=255)
aGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAg < 1:933212/76‑1 (MQ=255)
gACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGaaa > 1:1147615/1‑76 (MQ=255)
ggCATTGCTATCTTCAAAGACAAACCCACTGGCGACGCCACCTGCGAAGTTCTCAAGAGAACAGTCAGAAACCGTa < 1:1483313/76‑1 (MQ=255)
gCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTAt < 1:550397/76‑1 (MQ=255)
aTTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCa < 1:666578/76‑1 (MQ=255)
aTTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCa < 1:472414/76‑1 (MQ=255)
ttACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAg > 2:663862/1‑76 (MQ=255)
tATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAg < 2:566478/76‑1 (MQ=255)
aTCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCTGTAAGc < 1:96450/76‑1 (MQ=255)
aTCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGc > 2:1037876/1‑76 (MQ=255)
aTCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGc > 2:691680/1‑76 (MQ=255)
tCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGcc < 1:985377/76‑1 (MQ=255)
cTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGccc > 1:1171789/1‑76 (MQ=255)
cAAAGACAAACCCACTGGCGACGCCATCTGCAAAGTNCTCAACACAATAGACGGAAACCGTATCAGCAAGCNCAcc > 1:182814/1‑76 (MQ=255)
aaaGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCg > 2:808233/1‑76 (MQ=255)
aGACAAACCCACTGGCGACGCCATTTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGt > 2:792979/1‑76 (MQ=255)
aGACAAACCCACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGt < 2:12835/76‑1 (MQ=255)
ccACTGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCa < 2:172305/76‑1 (MQ=255)
tGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTaa < 1:685550/76‑1 (MQ=255)
tGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTaa < 2:1087884/76‑1 (MQ=255)
tGGCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTaa > 1:474553/1‑76 (MQ=255)
ggCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAAc < 1:1023150/76‑1 (MQ=255)
ggCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAAc > 1:1208902/1‑76 (MQ=255)
ggCGACGCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGGATCAGCAAGCCCACCGGTGCGCCGCACTAAc < 1:1133945/76‑1 (MQ=255)
aCGCCATCTGCANAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCa > 1:18127/1‑76 (MQ=255)
gCCATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGc > 2:180066/1‑76 (MQ=255)
ccATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcg > 1:1093053/1‑76 (MQ=255)
cATCTGCAAAGTTCTCAGGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgt < 1:177517/76‑1 (MQ=255)
cATCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgt < 1:1343846/76‑1 (MQ=255)
aTCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgta < 2:474553/76‑1 (MQ=255)
aTCTGCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgta < 2:654654/76‑1 (MQ=255)
gCAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgtaccgt < 2:283812/76‑1 (MQ=255)
cAAAGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGcgtaccgta < 2:172510/76‑1 (MQ=255)
|
CGAATAGCCCGTAACAGCGACCAGGCATTACTATCTTCAAAGACAAACCCACTGGCGACGCCATCTGCAAGGTTCTCAAGAGAACAGTCAGAAACCGTATCAGCAAGCCCACCGGTGCGCCGCACTAACGGCAGCGTACCGTA > REL606/3498181‑3498323
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
