Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
21 |
62.2 |
4089897 |
94.3% |
3856772 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,911,973 |
C→T |
intergenic (‑174/‑149) |
yifB ← / → ilvL |
predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,911,973 | 0 | C | T | 100.0%
| 161.9
/ NA
| 43 | intergenic (‑174/‑149) | yifB/ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/22); total (21/22) |
GCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAA > REL606/3911898‑3912045
|
gCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTtc > 2:617858/1‑76 (MQ=255)
cGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTtcact > 1:967801/1‑76 (MQ=255)
cAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTttactca < 1:144832/76‑1 (MQ=255)
aaaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTttactcac < 1:1605221/76‑1 (MQ=255)
aaaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTtactcact > 2:1515529/1‑76 (MQ=255)
aaaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACta > 2:723959/1‑76 (MQ=255)
aaTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACtat < 1:681375/76‑1 (MQ=255)
aTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACtatt < 1:1286000/76‑1 (MQ=255)
aTGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATCTTTTTTACTCACtatt < 2:1575358/76‑1 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACtatttta < 2:901628/76‑1 (MQ=255)
cAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACtatttta < 2:1192578/76‑1 (MQ=255)
gACAAAGGATGAACTACGAGGAAGGGAACAACATTCATNCTGAAATTGAATTTTTTTTACTCACTATTTTAttttt < 1:1995717/76‑1 (MQ=255)
gACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTAttttt > 1:1857336/1‑76 (MQ=255)
aaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTaaaa > 2:853254/1‑76 (MQ=255)
aaGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTaaaa < 1:967797/76‑1 (MQ=255)
ggATGAACTACGAGGAAGGGAACAACATNGATACTGAAATTGAATTTTATNTACTCACTATTTTATTTTTaaaaaa > 1:288763/1‑76 (MQ=255)
aTGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAaaca > 2:710892/1‑76 (MQ=255)
aTGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTCTATTTTTAAAAaaca > 1:1690683/1‑76 (MQ=255)
gAACTACGAGGAAGGGAGCAACAGTTATACTGAAATTGANTTTTTATTACTCACTNTTTTATATTTAAAAaacaac > 2:2025755/1‑76 (MQ=255)
cTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAAt > 1:987143/1‑76 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAAtt > 1:1943313/1‑76 (MQ=255)
tACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAAtt > 2:1086582/1‑76 (MQ=255)
gAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTtat > 2:972972/1‑76 (MQ=255)
aGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTtata > 1:1129882/1‑76 (MQ=255)
ggAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTatat > 2:637072/1‑76 (MQ=255)
ggAAGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTatat > 1:232542/1‑76 (MQ=255)
aaGGGAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTg < 1:451645/76‑1 (MQ=255)
aaGGCAAGACCATGCGTACTGCAATTGCATTTCTGTTACTTCCTAACTTTTTTTTAATGAACAACAATTTATATTg < 1:2036494/76‑1 (MQ=255)
ggAACAACATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGaaa < 1:454282/76‑1 (MQ=255)
aacaacATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 2:873901/76‑1 (MQ=255)
aacaacATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 2:846555/76‑1 (MQ=255)
aacaacATTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAatt < 2:1034653/76‑1 (MQ=255)
caacaTTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAattat > 2:702382/1‑76 (MQ=255)
aacaTTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAattatt > 1:1932790/1‑76 (MQ=255)
acaTTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 1:1083299/76‑1 (MQ=255)
acaTTCATACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAAttatta < 2:931894/76‑1 (MQ=255)
tACTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcat > 2:881704/1‑76 (MQ=255)
aCTGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatc > 1:422410/1‑76 (MQ=255)
tGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat < 1:138135/76‑1 (MQ=255)
tGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat > 2:67812/1‑76 (MQ=255)
tGAAATTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGcatcat > 1:1242644/1‑76 (MQ=255)
aaaTTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaa < 1:156316/76‑1 (MQ=255)
aaTTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa < 2:546680/76‑1 (MQ=255)
aaTTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa < 2:1867668/76‑1 (MQ=255)
aaTTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa < 2:1242643/76‑1 (MQ=255)
aaTTGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaa < 1:765236/76‑1 (MQ=255)
ttGAATTTTTTTTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATaaaaa > 2:1490514/1‑76 (MQ=255)
ttttttTANTCAATATTTTATTTTGAAGAAACACACATTTATATTGAAATTATTAAACGCATCATAAAAATCGGcc < 2:349173/76‑1 (MQ=255)
ttttttTACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGcc < 1:1030946/76‑1 (MQ=255)
ttttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCa < 1:710893/76‑1 (MQ=255)
ttttACTCGCTATTTTATTTTTAAAAAACAACGATTTATATTGAAATTATTAAACGCATCANAAAAATCGGCCaaa > 2:33980/1‑76 (MQ=255)
ttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCaaa > 2:1559497/1‑76 (MQ=255)
ttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCaaa > 1:1214262/1‑76 (MQ=255)
ttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCaaa > 1:1142687/1‑76 (MQ=255)
ttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCaaa > 1:195202/1‑76 (MQ=255)
ttttACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCaaa > 1:266463/1‑76 (MQ=255)
|
GCTCGCAAAAATGCAGCGGACAAAGGATGAACTACGAGGAAGGGAACAACATTCATACTGAAATTGAATTTTTTTCACTCACTATTTTATTTTTAAAAAACAACAATTTATATTGAAATTATTAAACGCATCATAAAAATCGGCCAAA > REL606/3911898‑3912045
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
