Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
21 |
62.2 |
4089897 |
94.3% |
3856772 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,568 |
C→T |
intergenic (‑9/‑191) |
iclR ← / → metH |
DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,568 | 0 | C | T | 100.0%
| 145.4
/ NA
| 40 | intergenic (‑9/‑191) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/22); total (18/22) |
CCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCC > REL606/4202495‑4202637
|
ccAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTTCCGCGTTTTGCGGGGATGGGGGCGGCCCTGACAGtcttct > 1:1503482/1‑76 (MQ=255)
cAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTcttctt < 2:1190911/76‑1 (MQ=255)
aGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCttt < 2:1698039/76‑1 (MQ=255)
gTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCtttt < 1:1812961/76‑1 (MQ=255)
tCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCttttt < 2:549695/76‑1 (MQ=255)
tCGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGGGCGGCCATGCCAGGCtttttttt > 2:862504/1‑76 (MQ=255)
cGCTGGTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGGGCGGCCCAGGCAGGCTTTTTTTTc > 2:1872512/1‑76 (MQ=255)
gCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGGTTTGCGGGGAAGGGGGGGACCATGACAGGCTTCttttttt > 1:1379967/1‑74 (MQ=255)
tGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGGTTTGCGGGGATGGGGGGGGCCATGACAGTCTTCTTTTTTTGt > 1:437231/1‑76 (MQ=255)
ggTGCGGTGGCAACGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGGGCGACCATGACAGTCTTCTTTTTTTGTa > 2:1112985/1‑76 (MQ=255)
tGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATc < 2:203949/76‑1 (MQ=255)
gCGGTGGCAACGNCGNGTTTTCTGCCGCGTTTCGNGGGAATAGGTGCGACCATGACAGTCTTCTTTTTCTGTATCg < 1:1657382/76‑1 (MQ=255)
tGGCAGCGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGa < 1:959288/76‑1 (MQ=255)
tGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGGATGGGGGCGACCATGACAGTCTTCTTTTTTTTTTTCGTGGa > 2:367408/1‑76 (MQ=255)
ggCAGCGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGaa < 1:1016091/76‑1 (MQ=255)
gCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGaaa < 2:1572896/76‑1 (MQ=255)
aCGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtca < 2:1808813/76‑1 (MQ=255)
cggcggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcat < 2:1450571/76‑1 (MQ=255)
gcggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcattt > 2:1873129/1‑76 (MQ=255)
cggGTTTTCTGCCGCGTTTCGCGTGAANGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcatttt > 2:3981/1‑76 (MQ=255)
gggTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcattttc < 1:717810/76‑1 (MQ=255)
ggTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcattttca < 2:369841/76‑1 (MQ=255)
ttttCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcattttcatt > 1:1153013/1‑76 (MQ=255)
tttCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAAtcattttcattt < 2:466308/76‑1 (MQ=255)
tCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCAttttt < 2:996525/76‑1 (MQ=255)
tGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAt < 2:698632/76‑1 (MQ=255)
gCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt > 2:454982/1‑76 (MQ=255)
gCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt > 2:1287771/1‑76 (MQ=255)
gCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt < 1:629894/76‑1 (MQ=255)
gcgTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGtt < 2:1444459/76‑1 (MQ=255)
cgTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTNTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTa < 1:1994840/76‑1 (MQ=255)
gTTTCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAg > 2:1148232/1‑76 (MQ=255)
tttCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGc > 2:942312/1‑76 (MQ=255)
tCGCGGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTa < 2:356380/76‑1 (MQ=255)
cgcgGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTaa < 2:351108/76‑1 (MQ=255)
cgGGAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATg > 2:1193331/1‑76 (MQ=255)
gAATGGGTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCaa < 1:151894/76‑1 (MQ=255)
ggTGCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGtt < 1:362634/76‑1 (MQ=255)
gCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCt > 2:418936/1‑76 (MQ=255)
gCGACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCt > 1:333668/1‑76 (MQ=255)
gACCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGa > 1:1903728/1‑76 (MQ=255)
aCCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTGTTATTGTTAGCTAATGCAATAGTTGCTGaa > 1:44246/1‑76 (MQ=255)
aCCATGACAGTCTTCTTTTTCTGTATCGTGGAAATCAGTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGaa > 1:1711935/1‑76 (MQ=255)
cATNACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACt > 1:1839288/1‑76 (MQ=255)
cATGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACt > 1:929117/1‑76 (MQ=255)
tGACAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGa > 1:1300592/1‑76 (MQ=255)
cAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATcc > 2:670127/1‑76 (MQ=255)
cAGTCTTCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATcc > 1:1505555/1‑76 (MQ=255)
|
CCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCC > REL606/4202495‑4202637
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
