Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A106 F1 I1 R1
|
16 |
286.4 |
19211214 |
90.7% |
17424571 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,155,456 |
C→T |
intergenic (+16/‑99) |
thrT → / → tuf |
tRNA‑Thr/protein chain elongation factor EF‑Tu (duplicate of tufA) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,155,456 | 0 | C | T | 99.6%
| 960.7
/ ‑4.0
| 239 | intergenic (+16/‑99) | thrT/tuf | tRNA‑Thr/protein chain elongation factor EF‑Tu (duplicate of tufA) |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (148/90); total (148/91) |
| Fisher's exact test for biased strand distribution p-value = 3.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 |
Only 100 of 250 total aligned reads displayed.
TAGAGCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCCTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCACCGAT > REL606/4155384‑4155528
|
agagCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGtt > 2:180700/1‑76 (MQ=255)
agagCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGtt > 1:2783899/1‑76 (MQ=255)
agCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGtttt < 2:4468653/76‑1 (MQ=255)
agCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGtttt > 1:6955562/1‑76 (MQ=255)
gcgcACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGttttt < 2:8474052/76‑1 (MQ=255)
cgcACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGtttttt < 1:5250359/76‑1 (MQ=255)
gcACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTc < 2:8160239/76‑1 (MQ=255)
gcACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTc < 2:7952120/76‑1 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:3176364/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:432323/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:5156980/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:3866898/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:5839292/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:6048247/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:648849/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:7406998/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:7866568/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:2675239/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:2373404/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:2079265/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:8616140/1‑76 (MQ=255)
cACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTcc > 2:1985909/1‑76 (MQ=255)
ccTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTc < 2:4560512/76‑1 (MQ=255)
ttGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTg < 1:769219/76‑1 (MQ=255)
ttGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTg < 1:4931897/76‑1 (MQ=255)
gTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGttt < 1:287922/76‑1 (MQ=255)
tAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTa < 2:1129956/76‑1 (MQ=255)
aGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTAtt > 1:7366767/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 1:1235554/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 1:8237274/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt < 1:8667369/76‑1 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 1:595374/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 2:9343697/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 1:2297822/1‑76 (MQ=255)
tGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAt > 1:3554569/1‑76 (MQ=255)
gAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAtt < 1:1647508/76‑1 (MQ=255)
gAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCAtt < 2:2393548/76‑1 (MQ=255)
aGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTc > 2:7567781/1‑76 (MQ=255)
ggTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTca < 1:2123563/76‑1 (MQ=255)
ggTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTca > 2:37542/1‑76 (MQ=255)
ggTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTca < 1:7610757/76‑1 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa > 2:4916975/1‑76 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa < 1:2729433/76‑1 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa < 1:2856593/76‑1 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa < 1:3790794/76‑1 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa < 1:6879595/76‑1 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa > 2:5464779/1‑76 (MQ=255)
gTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaa < 2:3972553/76‑1 (MQ=255)
tCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTcaac < 1:1961212/76‑1 (MQ=255)
cAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGt < 1:517106/76‑1 (MQ=255)
gTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCg < 2:5639366/76‑1 (MQ=255)
gTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCg < 1:961561/76‑1 (MQ=255)
gTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCg < 1:1866799/76‑1 (MQ=255)
cGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGc < 2:1786532/76‑1 (MQ=255)
taTCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCAt > 2:6193368/2‑76 (MQ=255)
aaTCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCAt > 1:3422838/1‑76 (MQ=255)
aaTCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCAt < 2:6897915/76‑1 (MQ=255)
aaTCTGCCTATCAGCACCACTTCTTTTCTCC‑CCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCCTg > 2:7738727/1‑76 (MQ=255)
aTCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATg > 2:6801718/1‑76 (MQ=255)
aTCTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATg > 1:7358956/1‑76 (MQ=255)
cTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGtt > 1:2009891/1‑76 (MQ=255)
cTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGtt > 1:7815407/1‑76 (MQ=255)
cTGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGtt > 1:1802056/1‑76 (MQ=255)
tGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTg > 1:346048/1‑76 (MQ=255)
tGCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTg > 1:9195919/1‑76 (MQ=255)
gCCTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGc > 1:3378867/1‑76 (MQ=255)
ccTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGcc > 1:8060394/1‑76 (MQ=255)
cTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCt < 1:8352573/76‑1 (MQ=255)
cTATCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCt < 1:4451478/76‑1 (MQ=255)
aTCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTgg > 1:1508303/1‑76 (MQ=255)
aTCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTgg < 1:1116656/76‑1 (MQ=255)
tCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGt < 2:9026538/76‑1 (MQ=255)
tCAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGt < 2:5336941/76‑1 (MQ=255)
cAGCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGtt > 1:6355368/1‑76 (MQ=255)
tgCACCACTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTg > 2:9365772/2‑76 (MQ=255)
ccacTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGAtgt > 2:535962/1‑76 (MQ=255)
ccacTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGAtgt > 2:8652499/1‑76 (MQ=255)
ccacTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGAtgt > 1:3930630/1‑76 (MQ=255)
ccacTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGAtgt > 2:8391353/1‑76 (MQ=255)
acTTCTTTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtgg > 2:3715632/1‑76 (MQ=255)
cttcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtggt > 2:6319416/1‑76 (MQ=255)
ttcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtggtg < 1:9067614/76‑1 (MQ=255)
ttcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtggtg < 2:9075937/76‑1 (MQ=255)
ttcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtggtg < 2:4707788/76‑1 (MQ=255)
ttcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATgtggtg < 1:5897155/76‑1 (MQ=255)
tcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGa > 2:6207058/1‑76 (MQ=255)
tcttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGa < 1:3203277/76‑1 (MQ=255)
cttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGat < 1:5596771/76‑1 (MQ=255)
cttTTCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGat > 1:5712463/1‑76 (MQ=255)
tttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAGGTCGGGCATGTTGCCTGGTTGATGTGGTGatat > 1:4264778/1‑76 (MQ=255)
tttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGatat < 1:3296680/76‑1 (MQ=255)
tttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGatat < 1:3172411/76‑1 (MQ=255)
tttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGatat < 1:4784731/76‑1 (MQ=255)
ttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATc < 1:6615325/76‑1 (MQ=255)
ttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATc > 2:6598042/1‑76 (MQ=255)
ttCTCCTCCTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATc < 1:7878272/76‑1 (MQ=255)
tcctccTTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCAcc > 2:3445888/1‑76 (MQ=255)
cctcctTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCACCg > 2:2811048/1‑76 (MQ=255)
cctcctTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCACCg > 2:5980219/1‑76 (MQ=255)
cctcctTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCACCg > 1:3737695/1‑76 (MQ=255)
|
TAGAGCGCACCCTTGGTAAGGGTGAGGTCGGCAGTTCGAATCTGCCTATCAGCACCACTTCTTTTCTCCTCCCTGTTTTTTCCTTCTGTTTATTGCATTCAACAAGTCGGGCATGTTGCCTGGTTGATGTGGTGATATCACCGAT > REL606/4155384‑4155528
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
