Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A106 F1 I1 R1 16 286.4 19211214 90.7% 17424571 75.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC REL606 4,506,110 Δ16,229 bp between IS1 sgcR–insA‑27 18 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4505400–4506111 4522279–4521570 15460–16880 91 [81] [79] 85 [insB‑26]–[insA‑27] [insB‑26],insA‑26,sgcR,sgcE,sgcA,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,ECB_04174,yjhR,yjhR,yjhS,yjhT,yjhA,fimB,insB‑27,[insA‑27]

GATK/CNVnator alignment

N/A