Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F1 I1 R1
|
21 |
46.3 |
3071142 |
93.0% |
2856162 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,015,771 |
IS150 (+) +3 bp |
coding (1192‑1194/1677 nt) |
ECB_02816 → |
KpsD protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2774435 = | NA (NA) | 54 (1.200) |
33/146 |
0.2 |
100% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3015771 = |
0 (0.000) | coding (1192/1677 nt) |
ECB_02816 |
KpsD protein |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 49 (1.070) |
35/148 |
0.2 |
100% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 3015773 |
0 (0.000) | coding (1194/1677 nt) |
ECB_02816 |
KpsD protein |
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774509‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG > REL606/3015771‑3015843
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:770640/1‑76
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:902067/1‑76
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC > 1:1507655/1‑76
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACT > 1:844886/1‑76
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTT < 2:757061/76‑1
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTT > 1:825820/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGC > 1:785039/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGC > 1:785023/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGC > 2:796465/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGC > 1:785019/1‑76
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGC > 1:1352495/1‑76
CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCC > 2:1388517/1‑76
CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCC > 1:607267/1‑76
ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCA < 1:1053725/76‑1
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTC < 2:697034/76‑1
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCC > 1:440641/1‑76
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCC > 1:586997/1‑76
TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCA < 1:885950/76‑1
TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCA < 1:1238683/76‑1
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCA < 1:1482406/76‑1
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCA < 1:1398512/76‑1
AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAA < 1:1108218/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGA < 1:296034/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGA < 1:748974/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGA > 1:754269/1‑76
ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGA < 1:525879/76‑1
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:1058/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:454756/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:1283516/1‑76
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA < 1:1361848/76‑1
CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:1386130/1‑76
CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAG > 2:637394/1‑76
CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAG < 2:559550/76‑1
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCC < 2:469651/76‑1
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAG < 2:734121/76‑1
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCC < 1:796475/76‑1
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > 2:1506978/1‑76
TTTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATG < 1:1219068/76‑1
TTAACTGTGCAACGTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:1521439/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:1370602/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:473652/76‑1
TTAACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:540934/76‑1
ACTGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCATTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGG < 2:163291/76‑1
TGTCCAACTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAG < 2:1439744/76‑1
CTTTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAAC < 2:1131976/76‑1
TTTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTG < 1:885885/76‑1
TTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGA < 2:1291491/76‑1
TTTGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGA < 2:559263/76‑1
TGGGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATC < 2:756922/76‑1
GGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAc > 1:300068/1‑75
GGGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAG > 1:1435294/1‑76
GGTCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGC > 2:559920/1‑76
ACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG < 2:1004609/76‑1
ACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG < 1:306014/76‑1
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774509‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG > REL606/3015771‑3015843
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
