Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F406 I2 R1 14 182.2 9069404 93.8% 8507100 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,350,981 A→C I682S (ATC→AGC)  arcB ← aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,350,9810AC79.0% 353.6 / 86.1 152I682S (ATC→AGC) arcBaerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
Reads supporting (aligned to +/- strand):  ref base A (18/14);  new base C (62/58);  total (80/72)
Fisher's exact test for biased strand distribution p-value = 6.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01

Only 100 of 152 total aligned reads displayed.

CAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTC  >  NC_000913/3350886‑3351076
                                                                                               |                                                                                               
caacaaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAg                                                                                             >  1:4071073/1‑100 (MQ=255)
 aacaaTTCCTTTTGTATCCGGCGCGGTCGGATTCGTCTCCAGTTCTCTGGCATAGCCCGGCATCATCTTCTCATACACCGCTATCCCGTCGGTGCTCAGc                                                                                            <  2:917095/100‑1 (MQ=255)
  acaaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCt                                                                                           >  2:2132056/1‑100 (MQ=255)
  acaaTGCCTTTTTTATCATGCGCAGTCGGATTCGACTCCAGCATGCTGATATATCCCGGCATCATTTTTTCAAAATCGGCTCACCCGGGGGTGATGAGCt                                                                                           >  2:554907/1‑100 (MQ=255)
   caaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCtt                                                                                          <  2:3112012/100‑1 (MQ=255)
    aaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTc                                                                                         <  1:1265110/100‑1 (MQ=255)
    aaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTc                                                                                         <  1:2977756/100‑1 (MQ=255)
    aaTGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTc                                                                                         <  2:4039525/100‑1 (MQ=255)
      tGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCgg                                                                                       >  1:3570839/1‑100 (MQ=255)
      tGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCgg                                                                                       <  2:4313371/100‑1 (MQ=255)
       gCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGt                                                                                      >  2:2777686/1‑100 (MQ=255)
       gCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGt                                                                                      <  2:1598357/100‑1 (MQ=255)
        ccTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTc                                                                                     <  1:2529580/100‑1 (MQ=255)
        ccTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTc                                                                                     <  2:2535384/100‑1 (MQ=255)
                aTCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGt                                                                             >  1:1543845/1‑100 (MQ=255)
                 tCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGtt                                                                            >  2:156120/1‑100 (MQ=255)
                 tCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGtt                                                                            >  2:2654866/1‑100 (MQ=255)
                   cTGCGCCGTCAGATTCGACTCCAGCGCGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCg                                                                          <  2:3677504/100‑1 (MQ=255)
                   cTGCGCCGTCAGATTCGACTCCAGCACGCTGACATATCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCg                                                                          <  1:4299723/100‑1 (MQ=255)
                   cTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCg                                                                          <  2:116979/100‑1 (MQ=255)
                    tGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCCTCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTAGGTCCTACAAGTTCga                                                                         >  2:2489700/1‑100 (MQ=255)
                    tGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCga                                                                         <  1:4234199/100‑1 (MQ=255)
                     gcgcCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCgag                                                                        <  2:2105803/100‑1 (MQ=255)
                      cgcCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCgaga                                                                       <  1:663542/100‑1 (MQ=255)
                      cgcCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCgaga                                                                       <  1:3273356/100‑1 (MQ=255)
                       gcCGTCGGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCGAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTGCTAGAt                                                                      <  2:4226747/100‑1 (MQ=255)
                       gcCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTCACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGAt                                                                      <  1:3991339/100‑1 (MQ=255)
                        ccGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCCGCTTCGGTCCTACAAGTTCGAGATa                                                                     >  2:502016/1‑100 (MQ=255)
                         cGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATAc                                                                    <  2:3011951/100‑1 (MQ=255)
                          gTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACt                                                                   <  2:2763644/100‑1 (MQ=255)
                           tCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGAtcgga                                                                  >  1:3251118/1‑96 (MQ=255)
                              gATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTc                                                               >  1:4211799/1‑100 (MQ=255)
                               aTTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTcc                                                              >  2:4296363/1‑100 (MQ=255)
                               aTTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTcc                                                              <  2:3429251/100‑1 (MQ=255)
                                 tCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAg                                                            <  2:2423047/100‑1 (MQ=255)
                                  cGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGc                                                           >  1:2143437/1‑100 (MQ=255)
                                  cGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGc                                                           >  2:4459836/1‑100 (MQ=255)
                                  cGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGc                                                           >  2:3713936/1‑100 (MQ=255)
                                    aCTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCAt                                                         <  2:3833973/100‑1 (MQ=255)
                                     cTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATg                                                        >  1:280126/1‑100 (MQ=255)
                                     cTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATg                                                        >  1:1072322/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      >  1:1188768/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      >  2:2575312/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      >  1:4559215/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      >  1:486923/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      <  1:484976/100‑1 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      >  1:4123052/1‑100 (MQ=255)
                                       ccAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATggg                                                      <  1:564074/100‑1 (MQ=255)
                                          gCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAat                                                   >  1:2558722/1‑100 (MQ=255)
                                             ngCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACCAGTTCGAGATACTGTTCCCGCATGGGAACATc                                                >  1:2161043/2‑100 (MQ=255)
                                             cGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACATGTTCGAGATACTGTTCCAGCATGGGAATATc                                                >  1:835774/1‑100 (MQ=255)
                                              gCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCg                                               <  1:2703239/100‑1 (MQ=255)
                                               cTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGa                                              >  1:1619451/1‑100 (MQ=255)
                                                 gACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGc                                            <  2:547032/100‑1 (MQ=255)
                                                 gACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGc                                            <  1:2090739/100‑1 (MQ=255)
                                                 gACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGc                                            >  1:2260217/1‑100 (MQ=255)
                                                    aTAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAAt                                         <  1:1562888/100‑1 (MQ=255)
                                                      aGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGc                                       >  2:3211691/1‑100 (MQ=255)
                                                      aGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGCGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGc                                       >  2:1491040/1‑100 (MQ=255)
                                                       gCCCGGCATCATCTTCTCAAACACCGCTAACCGGCCGTAGCTCAGCTTAGGTCCTACACGTTCGAGATACTGTTCCAGCATGGAAATATCGAGCAATGCt                                      >  2:2584772/1‑100 (MQ=255)
                                                       gCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCt                                      >  1:1884798/1‑100 (MQ=255)
                                                       gCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCt                                      <  2:1471152/100‑1 (MQ=255)
                                                       gCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCt                                      >  1:1159575/1‑100 (MQ=255)
                                                        cccGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCtt                                     >  1:2373445/1‑100 (MQ=255)
                                                          cGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCt                                   <  2:3133823/100‑1 (MQ=255)
                                                           ggCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTg                                  >  2:1027669/1‑100 (MQ=255)
                                                           ggCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTg                                  >  1:26137/1‑100 (MQ=255)
                                                            gCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGa                                 >  1:125974/1‑100 (MQ=255)
                                                            gCATCATCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGa                                 <  2:387930/100‑1 (MQ=255)
                                                             catcatCTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAt                                >  2:343117/1‑100 (MQ=255)
                                                              atcatcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAtt                               <  2:1015739/100‑1 (MQ=255)
                                                              atcatcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAtt                               <  1:1326709/100‑1 (MQ=255)
                                                              atcatcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAtt                               <  1:58562/100‑1 (MQ=255)
                                                               tcatcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAttt                              >  2:45691/1‑100 (MQ=255)
                                                               tcatcTTCGCAGACACCGCTAACCCGTCGGTGCCCAGCTTCGGTCCGACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGAttt                              <  1:3878921/100‑1 (MQ=255)
                                                                catcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGCGAATATCGAGCAATGCTTCTGATTTa                             <  2:1204946/100‑1 (MQ=255)
                                                                 atcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACTAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTAc                            <  2:3209560/100‑1 (MQ=255)
                                                                 atcTTCTCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTAc                            >  1:2206812/1‑100 (MQ=255)
                                                                    ttctCAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGt                         >  1:2185618/1‑100 (MQ=255)
                                                                     tctcAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGtt                        >  1:595516/1‑100 (MQ=255)
                                                                      ctcAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtc                       <  1:3907205/100‑1 (MQ=255)
                                                                      ctcAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtc                       <  2:477087/100‑1 (MQ=255)
                                                                      ctcAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtc                       <  1:154574/100‑1 (MQ=255)
                                                                       ncAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtct                      >  1:3622262/2‑100 (MQ=255)
                                                                        cAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtctc                     >  2:1750415/1‑100 (MQ=255)
                                                                        cAAACACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTtctc                     <  2:1703438/100‑1 (MQ=255)
                                                                         aaaCACCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTctct                    >  1:1646979/1‑100 (MQ=255)
                                                                          aaCACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCtctt                   >  2:2423245/1‑100 (MQ=255)
                                                                           acacCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCtcttc                  <  1:1372427/100‑1 (MQ=255)
                                                                            cacCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCtcttct                 >  1:468498/1‑100 (MQ=255)
                                                                             acCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTg                <  1:1749427/100‑1 (MQ=255)
                                                                             acCGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTg                <  1:379114/100‑1 (MQ=255)
                                                                              ccGCTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgt               <  2:3063312/100‑1 (MQ=255)
                                                                                 cTAACCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgtcgt            >  1:1769347/1‑100 (MQ=255)
                                                                                 cTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgtcgt            >  1:1807660/1‑100 (MQ=255)
                                                                                 cTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTgtcgt            >  1:100283/1‑100 (MQ=255)
                                                                                   aaCCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCa          <  2:4113521/100‑1 (MQ=255)
                                                                                    aCCCGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCAc         >  1:1581959/1‑100 (MQ=255)
                                                                                     cccGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCAcc        >  1:4447992/1‑100 (MQ=255)
                                                                                      ccGTCGGTGCTCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCg       <  2:401828/100‑1 (MQ=255)
                                                                                               |                                                                                               
CAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGTCCTACAAGTTCGAGATACTGTTCCAGCATGGGAATATCGAGCAATGCTTCTGATTTACTGTTCTCTTCTGTCGTCACCGTACTC  >  NC_000913/3350886‑3351076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A