Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I1 R1 13 65.4 2035110 96.5% 1963881 151.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,809,923 Δ10 bp coding (307‑316/738 nt) ygaZ → putative L‑valine exporter, norvaline resistance protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2809923 2809932 10 56 [0] [0] 57 ygaZ putative L‑valine exporter, norvaline resistance protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28099220 (0.000)56 (0.890) 47/300 0.2 100% coding (306/738 nt) ygaZ putative L‑valine exporter, norvaline resistance protein
?NC_000913 2809933 = 0 (0.000)coding (317/738 nt) ygaZ putative L‑valine exporter, norvaline resistance protein

GATK/CNVnator alignment

N/A