Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I2 R1 70 105.0 5244496 94.3% 4945559 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,101,039 (C)7→8 coding (585/720 nt) yggN ← DUF2884 family putative periplasmic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,101,0321.C88.5% 289.7 / 36.2 96coding (592/720 nt)yggNDUF2884 family putative periplasmic protein
Reads supporting (aligned to +/- strand):  ref base . (8/3);  new base C (44/41);  total (52/44)
Fisher's exact test for biased strand distribution p-value = 2.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

Only 100 of 110 total aligned reads displayed.

GGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAA  >  NC_000913/3100933‑3101123
                                                                                                    |                                                                                                
ggCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAg                                                                                                   <  2:828096/100‑1 (MQ=255)
 gCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTCTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c                                                                                                <  1:2119621/100‑1 (MQ=255)
  cTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c                                                                                              >  1:747451/1‑100 (MQ=255)
  cTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c                                                                                              >  1:746966/1‑100 (MQ=255)
   tttCTTCCGGAGTCACAATGGGGCTACAAACATCTTTGCCAAGCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c                                                                                            <  2:2106180/98‑1 (MQ=255)
    aTCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑c                                                                                          >  1:1149654/1‑100 (MQ=255)
       ttCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑tc‑cc                                                                                      <  1:2032359/100‑1 (MQ=255)
        tCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑ccc                                                                                     >  1:395088/1‑99 (MQ=255)
        tCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCCTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑ccc                                                                                     <  1:2510586/100‑2 (MQ=255)
         ccAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑cccn                                                                                    <  1:1544356/100‑3 (MQ=255)
         ccAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑ccca                                                                                    >  1:442541/1‑98 (MQ=255)
          cAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑cccag                                                                                   <  2:2155833/100‑4 (MQ=255)
          cAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑c‑c‑c‑cc‑cccag                                                                                   <  2:2478223/100‑4 (MQ=255)
           agagTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTTTTTTTTTTTCTACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑CGCC‑CCAgg                                                                                   >  2:1530675/1‑100 (MQ=255)
            gagTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑C‑CC‑CCAGGCt                                                                                 >  1:885386/1‑100 (MQ=255)
               tCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTc                                                                               <  1:2020234/100‑1 (MQ=255)
                cacaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTcc                                                                              >  1:1420701/1‑100 (MQ=255)
                 acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTccc                                                                             <  2:1482139/100‑1 (MQ=255)
                 acaACGCGCCTACACGCATCTTTGCCAAACTGCGGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGCATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTccc                                                                             <  2:2393931/100‑1 (MQ=255)
                  caAGGCGGCTACAAAGATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTTAGGATTGCAG‑‑C‑CAC‑CC‑CTAGGCtttaca                                                                            >  2:405946/1‑96 (MQ=255)
                  caACGCGGCTACAATCTTCTTTTCCAATCTGCTGGAAATCTTTTTGCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑CGCA‑CCAGGCGTCCCa                                                                            <  2:508828/100‑1 (MQ=255)
                  caACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCa                                                                            >  1:437309/1‑100 (MQ=255)
                  caACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCa                                                                            >  1:588520/1‑100 (MQ=255)
                  caACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑C‑CCACCAGGCTTCCCa                                                                            <  2:508800/100‑1 (MQ=255)
                    aCGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGc                                                                          <  1:652311/100‑1 (MQ=255)
                    aCGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGc                                                                          <  2:173644/100‑1 (MQ=255)
                      gcgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGcac                                                                        <  1:1091283/100‑1 (MQ=255)
                      gcgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGcac                                                                        <  2:1874325/100‑1 (MQ=255)
                      gcgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGcac                                                                        <  1:1041825/100‑1 (MQ=255)
                      gcgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑C‑CC‑CCAGGCTTCCCAGcaca                                                                       >  2:320835/1‑100 (MQ=255)
                        ngCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACAt                                                                      >  1:2098269/2‑100 (MQ=255)
                         gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGATTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACAtt                                                                     >  2:427483/1‑100 (MQ=255)
                           tACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCt                                                                   <  1:2438917/100‑1 (MQ=255)
                            aCAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTg                                                                  >  2:830457/1‑100 (MQ=255)
                             cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCC‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTg                                                                  >  1:185915/1‑100 (MQ=255)
                             cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGt                                                                 >  1:742478/1‑100 (MQ=255)
                                aCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAAt                                                              <  2:35125/100‑1 (MQ=255)
                                aCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAAt                                                              <  2:950457/100‑1 (MQ=255)
                                 cATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATg                                                             <  2:2279631/100‑1 (MQ=255)
                                  aTCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATgg                                                            >  2:1749610/1‑100 (MQ=255)
                                   tatctGCCAAACTCCCCGAACTCTTTTTCCTGCCCTTTACCCCCGATCTTGATTGAAGATTGCCGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATggg                                                           <  2:897568/96‑1 (MQ=255)
                                   tCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTTTTTTTTTTTTTTATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCCCATTCTGTAATggg                                                           >  2:901760/1‑100 (MQ=255)
                                   tCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATggg                                                           <  1:1614354/100‑1 (MQ=255)
                                   tCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATggg                                                           <  1:496989/100‑1 (MQ=255)
                                    cTTTGCGAAACTGATGGAAATCTTTTTCCTGCTTTTTCCACTCGTTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGt                                                          <  2:1981394/100‑1 (MQ=255)
                                    cTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTTAGCATTGCAG‑‑C‑CGC‑CC‑CCAGGCTTCCCCGCACATTCTGTAATGGGt                                                          >  2:752859/1‑100 (MQ=255)
                                     tttGCCAAACTGCTGGCAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGtt                                                         >  2:1186694/1‑100 (MQ=255)
                                     tttGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAAAGGGtt                                                         >  1:2499870/1‑100 (MQ=255)
                                       tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTAc                                                       >  1:365606/1‑100 (MQ=255)
                                         ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTTTTTTTTTTTTTGATTAAGGATTGCAG‑‑CAC‑C‑CC‑CCAGGCTTGCGAGCACATTCTGTAATTGGTTCccg                                                     >  2:1463712/1‑100 (MQ=255)
                                           aaaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgcc                                                   >  1:307411/1‑100 (MQ=255)
                                           aaaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgcc                                                   >  1:1058835/1‑100 (MQ=255)
                                             aCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACcgccgc                                                 <  2:2308738/100‑1 (MQ=255)
                                                  tgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTc                                            >  1:1546923/1‑100 (MQ=255)
                                                   ggAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCa                                           <  1:1239146/100‑1 (MQ=255)
                                                      aaTCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGCCC‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGc                                         <  2:1439610/100‑1 (MQ=255)
                                                       aTCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAc                                       <  1:919852/100‑1 (MQ=255)
                                                         cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCg                                     <  1:1101214/100‑1 (MQ=255)
                                                              tCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTc                                >  1:1007203/1‑100 (MQ=255)
                                                               ccTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcg                               >  2:789766/1‑100 (MQ=255)
                                                               ccTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcg                               <  1:2135799/100‑1 (MQ=255)
                                                               ccTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcg                               >  2:1045492/1‑100 (MQ=255)
                                                                cTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcgc                              >  1:24485/1‑100 (MQ=255)
                                                                 tGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcgcg                             >  2:2196497/1‑100 (MQ=255)
                                                                 tGCTTTTTCCACGCGGTGTGGGTTGAGGATTGCGGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTcgcg                             <  2:490899/100‑1 (MQ=255)
                                                                   cTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGcc                           <  2:774781/100‑1 (MQ=255)
                                                                   cTTTTTCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGcc                           <  1:275219/100‑1 (MQ=255)
                                                                    tttttCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGccc                          >  1:904436/1‑100 (MQ=255)
                                                                       ttCCACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAtt                       >  1:2286042/1‑100 (MQ=255)
                                                                          cACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCa                    <  1:107231/100‑1 (MQ=255)
                                                                          cACTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCa                    <  1:2376360/100‑1 (MQ=255)
                                                                           aCTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAt                   <  1:1484239/100‑1 (MQ=255)
                                                                            cTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAtt                  >  1:2269474/1‑100 (MQ=255)
                                                                            cTCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAtt                  <  2:5216/100‑1 (MQ=255)
                                                                             tCGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTa                 <  2:2179909/100‑1 (MQ=255)
                                                                              cGGTTTGGATTGAGGATTGCGGCCC‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTa                 <  1:901586/100‑1 (MQ=255)
                                                                              cGGTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTaa                <  1:1204409/100‑1 (MQ=255)
                                                                                gTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg              <  1:893392/100‑1 (MQ=255)
                                                                                gTTTGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg              <  1:2323904/100‑1 (MQ=255)
                                                                                gTTTGGATTGAGGATTGCAG‑‑G‑C‑C‑GC‑CCAGGCTTCCCAGCACGTTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGc             >  1:1871951/1‑100 (MQ=255)
                                                                                 tttGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGc             <  1:674179/100‑1 (MQ=255)
                                                                                 tttGGATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGc             <  1:739978/100‑1 (MQ=255)
                                                                                   tGGATTGAGTGTTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg           <  1:1099915/100‑1 (MQ=255)
                                                                                     gATTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTc         >  2:1086732/1‑100 (MQ=255)
                                                                                      aTTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTcc        >  2:1543284/1‑100 (MQ=255)
                                                                                      aTTGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTcc        >  2:84967/1‑100 (MQ=255)
                                                                                      aTTGAGGATTGCAG‑‑C‑C‑CGCC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTcc        <  1:1572005/100‑1 (MQ=255)
                                                                                       ttGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCt       >  1:2327335/1‑100 (MQ=255)
                                                                                       ttGAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTATGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCTTTAATGCTGTctt       >  2:916582/1‑98 (MQ=255)
                                                                                         gAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGt     >  1:1037805/1‑100 (MQ=255)
                                                                                         gAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGt     >  2:2433337/1‑100 (MQ=255)
                                                                                         gAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGt     >  1:1038156/1‑100 (MQ=255)
                                                                                         gAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGt     >  1:1871859/1‑100 (MQ=255)
                                                                                         gAGGATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCCCCGCTTTTCAGCACCGCTTTCGCGCCCATCTCATTAATGCTGTCCTGt     >  1:1069378/1‑100 (MQ=255)
                                                                                           ggATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAGTGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCGATTTCATTAATGCGGTCCTGTaa   >  1:2303902/1‑100 (MQ=255)
                                                                                           ggATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa   >  1:1328489/1‑100 (MQ=255)
                                                                                           ggATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa   >  1:2569164/1‑100 (MQ=255)
                                                                                           ggATTGCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa   <  1:804128/100‑1 (MQ=255)
                                                                                           ggATTCCAGC‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGCAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaa   >  1:2451682/1‑100 (MQ=255)
                                                                                            gATTGCAGC‑C‑C‑C‑CC‑CCAGGCGTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTaaa  >  1:2065649/1‑100 (MQ=255)
                                                                                                    |                                                                                                
GGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAG‑‑C‑C‑C‑CC‑CCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAA  >  NC_000913/3100933‑3101123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A