Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F17 I0 R1	21	55.4	1282596	94.8%	1215901	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	USA300TCH1516_ALE	1,646,189	G→C	100%	A155G (GCA→GGA)	ypdF ←	Aminopeptidase YpdF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	USA300TCH1516_ALE	1,646,189	0	G	C	100.0%	183.9 / ‑6.5	61	A155G (GCA→GGA)	ypdF	Aminopeptidase YpdF
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (20/40); minor base A (1/0); total (21/40)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATTTTATCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGATATA  >  USA300TCH1516_ALE/1646051‑1646323

atTTTATCATTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGTTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGcctcct                                                                                                                                      <  2:40279/141‑1 (MQ=255)

atTTTATCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAACGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGcctcct                                                                                                                                      <  1:69579/141‑1 (MQ=255)

  tttATCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTCATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCttt                                                                                                                                    <  1:454566/141‑1 (MQ=255)

  tttATCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCttt                                                                                                                                    <  1:39345/141‑1 (MQ=255)

   ttATCACTTGCAACCCTATCTGCTAATGCACCTCTATCACCACATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCtttt                                                                                                                                   <  2:403743/141‑1 (MQ=255)

   ttATCACTTGCAACACCATGCGATACTGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCcttt                                                                                                                                   <  2:583923/141‑1 (MQ=255)

    tATCACTTGCATCACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTa                                                                                                                                  <  2:254730/141‑1 (MQ=255)

     aTCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTac                                                                                                                                 >  2:284334/1‑141 (MQ=255)

          ttGTAACACCATGTGGTAATGTACCTCTATGACCAGATGCTATAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAg                                                                                                                            <  2:63889/141‑1 (MQ=255)

          ttGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCGAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCATTCATGCCTCCTTTTacaacaa                                                                                                                            >  1:253574/1‑140 (MQ=255)

               acacCATGTGGTAATGCACCTCTATGACCAGATGCTCCAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTCTTACAACAGTTaaa                                                                                                                       >  2:260751/1‑141 (MQ=255)

                cacCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTaaaa                                                                                                                      <  2:114530/141‑1 (MQ=255)

                 acCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGTTTTCTAATAGTGCCTTTCATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTACAat                                                                                                                     >  2:588355/1‑141 (MQ=255)

                 acCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAat                                                                                                                     >  2:586426/1‑141 (MQ=255)

                  ccATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAata                                                                                                                    <  1:317191/141‑1 (MQ=255)

                     tgtgGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAatatat                                                                                                                 >  1:480591/1‑141 (MQ=255)

                          tAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAAAATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCata                                                                                                            <  1:573513/141‑1 (MQ=255)

                            attcACTTCTATGATCAGATGTTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATg                                                                                                          <  2:98262/138‑1 (MQ=255)

                            attcACCTCTATGACCAGATTCTACAATCGTATCGAATGATGGTCCATCTGGTACTCATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTTTGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATg                                                                                                          <  2:422337/138‑1 (MQ=255)

                            aTGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATg                                                                                                          <  2:411824/141‑1 (MQ=255)

                                     tATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATcaa                                                                                                 >  1:72823/1‑141 (MQ=255)

                                          ccAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTAATGCCTACTTTTACAACAGTTAAAATATATTAATATGTTTCATCAACAata                                                                                            >  2:111046/1‑141 (MQ=255)

                                           cAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAacat                                                                                           >  2:500495/1‑141 (MQ=255)

                                             gATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCTTCCTTTTACAACATCTACAATATATTCATATCCTTCATCAACAATAttt                                                                                         >  2:530386/1‑140 (MQ=255)

                                             gATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTACAATATATTCATATGTTTCATCAACAATATTa                                                                                         >  1:550535/1‑141 (MQ=255)

                                              aTGCTACATTCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCAGTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAg                                                                                        <  2:458533/141‑1 (MQ=255)

                                                      aTCGTATCGGATGATGGGCCATCTTCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCATTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCtttt                                                                                <  2:584657/141‑1 (MQ=255)

                                                      aTCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATGTTCATATGTTTCATCAACAATATTAGCTGCtttt                                                                                <  1:163511/141‑1 (MQ=255)

                                                          tATCGAATGATGGTCCATGTGCCGCTAATTCTAGCATTTTGCTTTCTAATCTTGTCATTAATACTGTTTCAGTCATGCCTCCTTTTACAACAGTTAAACTATATTCATATGTTTCATAAACAATATTAGCTGCTTTTTGaa                                                                            >  2:163414/1‑141 (MQ=255)

                                                            tCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTCTCACAGCCTGTCCGCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAAtt                                                                          <  1:635769/141‑1 (MQ=255)

                                                              gAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTaa                                                                        <  1:467577/141‑1 (MQ=255)

                                                                atgatgGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAg                                                                      <  1:125740/141‑1 (MQ=255)

                                                                 tgatgGTCTATCTGCTCCTAATTCTAGCATTTTGCTTACTAATATTGCCTTTAATTTTTTTTCAGTAATGCCTCCTGTTACAAAAGATAAAATTGTTTCATCTATATTATAAACAATATAACCAGCTTCATGAATTACAGc                                                                     >  2:5690/1‑141 (MQ=255)

                                                                   atgGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGGCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCaa                                                                   >  2:484682/1‑141 (MQ=255)

                                                                         cATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATCCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGt                                                             <  1:284334/141‑1 (MQ=255)

                                                                          aTCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTc                                                            <  1:586426/141‑1 (MQ=255)

                                                                          aTCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTc                                                            <  1:588355/141‑1 (MQ=255)

                                                                            cTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAg                                                          <  1:448999/141‑1 (MQ=255)

                                                                                tCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCTTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACTATATTAGCTGCTTTTTGACTTCAAGCCATTTCGTTAACAtt                                                      >  2:165674/1‑140 (MQ=255)

                                                                                tCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATc                                                      >  2:501651/1‑141 (MQ=255)

                                                                                 ccTATTTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATAGTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCt                                                     <  2:313297/141‑1 (MQ=255)

                                                                                  cTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTATCGCATTAAAGCAATTTCGTCAGCATCtt                                                    <  2:79483/141‑1 (MQ=255)

                                                                                     aTTCTAGCATTTGGCCTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTTAATTAAAGCAATTTCGTCAGCATCTTTGa                                                 <  2:465184/141‑1 (MQ=255)

                                                                                          aGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGtct                                            <  2:88114/141‑1 (MQ=255)

                                                                                           gCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGtctc                                           <  2:578456/141‑1 (MQ=255)

                                                                                            cATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTAATGACTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTGCGTCAGCATCTTTGACGTctct                                          <  2:196600/141‑1 (MQ=255)

                                                                                                ttGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAAtt                                      <  2:95077/141‑1 (MQ=255)

                                                                                                ttGCTTTCTAATATTGACTTTAATTCTTTTACAGTCATGCCTCCTTTTATAACAGTTAAAATATATTCATATGTTTCATCAACAAGATTAGCTGCTTTTTGAATAAAAGCGGTTTGGTCAGCATCTTTGACGTCTCTAAtt                                      <  2:45240/141‑1 (MQ=255)

                                                                                                ttGCTTTCTAATATTGACTTAAATTCTTTTTCAGTCATGCCTCCATTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAAtt                                      <  2:370460/141‑1 (MQ=255)

                                                                                                  gCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAAtttt                                    >  2:528270/1‑141 (MQ=255)

                                                                                                       cTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTa                               >  2:497676/1‑141 (MQ=255)

                                                                                                           tatTGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGt                           <  1:619945/141‑1 (MQ=255)

                                                                                                             ttGCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTAt                         >  2:462747/1‑141 (MQ=255)

                                                                                                               gCCTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTa                       <  1:375033/141‑1 (MQ=255)

                                                                                                                 cTTTAATTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGa                     <  1:337322/141‑1 (MQ=255)

                                                                                                                    tAATTCTTTTTCAGTCATGCCTCTTTTTACAACGGTTAAAATATATTCATATGTTTCATCAACAATATTAGTTGTTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAAt                  <  2:41821/141‑1 (MQ=255)

                                                                                                                     taTTCTTTTTCAGTCATGTCTCCTTTTACCAAAAATAAAATATGTTGGTATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATg                 <  1:118517/140‑1 (MQ=255)

                                                                                                                     caTTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATg                 <  1:165674/140‑1 (MQ=255)

                                                                                                                     aaTTCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATg                 <  1:501651/141‑1 (MQ=255)

                                                                                                                       ttCTTTTTCAGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCt               <  1:8801/141‑1 (MQ=255)

                                                                                                                                aGTCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGACTCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTTTTTATgt      >  2:403439/1‑140 (MQ=255)

                                                                                                                                  tCATGCCTCCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACACTAGTTGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTGTATCTATATTATTAGAAATTCtttttacttttt    >  2:405251/1‑135 (MQ=255)

                                                                                                                                    aTGACTCCTTTTACAATAGTTAAAATATATTCATATGTTTCATCAATAATATTAGCTGCTTGTTGAATTAAGGCAATTTCGTCGGCATATTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGAtata  <  2:127027/141‑1 (MQ=255)

ATTTTATCACTTGCAACACCATGTGGTAATGCACCTCTATGACCAGATGCTACAATCGTATCGAATGATGGTCCATCTGCTCCTAATTCTAGCATTTTGCTTTCTAATATTGCCTTTAATTCTTTTTCAGTCATGCCTGCTTTTACAACAGTTAAAATATATTCATATGTTTCATCAACAATATTAGCTGCTTTTTGAATTAAAGCAATTTCGTCAGCATCTTTGACGTCTCTAATTTTATCTACAGTATTAGAAATGCTTATTAATGATATA  >  USA300TCH1516_ALE/1646051‑1646323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A