Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 2
13 4 7
15 4 8
3 9 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 34 159
Multiple Base Substitutions 1 1
Deletions 3 18
Insertions 4 5
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 42 183

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 26 0 340.5 11737388 98.1% 11514377 90.8
A0 F0 I1 R1 12 0 380.8 13201512 98.4% 12990287 90.8
A13 F16 I1 R1 9 0 36.6 809542 98.0% 793351 141.0
A13 F40 I0 R1 17 0 35.0 784744 95.0% 745506 140.8
A13 F40 I1 R1 12 0 34.5 773110 93.2% 720538 148.0
A13 F55 I0 R1 26 0 48.4 1146576 93.4% 1070901 139.9
A13 F55 I1 R1 12 0 36.0 825780 91.1% 752285 148.0
A13 F68 I0 R1 25 0 50.4 1217238 93.3% 1135683 133.9
A13 F68 I1 R1 13 0 30.2 709236 94.0% 666681 140.9
A15 F17 I0 R1 21 0 55.4 1282596 94.8% 1215901 140.9
A15 F17 I1 R1 9 0 35.1 776774 98.1% 762015 141.0
A15 F40 I0 R1 13 0 14.1 329232 94.7% 311782 135.8
A15 F40 I1 R1 11 0 154.7 3977138 89.4% 3555561 134.7
A15 F54 I0 R1 17 0 21.8 494604 94.9% 469379 140.9
A15 F54 I1 R1 12 0 114.1 2913296 89.9% 2619053 134.8
A15 F70 I0 R1 32 0 71.1 1611198 94.9% 1529026 139.9
A15 F70 I1 R1 16 0 113.5 2638332 93.5% 2466840 136.1

Mutation Needle Plot

Mutation Targets

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