Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
523,299 |
C→G |
P272R (CCT→CGT) |
rhsD → |
rhsD element protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 523,299 | 0 | C | G | 100.0%
| 297.3
/ NA
| 102 | P272R (CCT→CGT) | rhsD | rhsD element protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (102/0); total (102/0) |
Only 100 of 102 total aligned reads displayed.
TTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCG > W3110S.gb/523279‑523340
|
ttcttctGGCAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:61330/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCATCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1386628/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCg > 1:18602/1‑37 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCGCGACACACTGCCCGGTACCg > 1:256547/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGacac > 1:102106/1‑48 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGCCACACTGCCCGGTAcc > 1:1287496/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACt > 1:51117/1‑51 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:461366/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:67703/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:163183/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1433258/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1326090/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:802160/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:216001/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1263106/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:851612/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1149606/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:1090540/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:249277/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc > 1:377042/1‑61 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc > 1:1561012/1‑60 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:543034/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:724748/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:567557/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:482825/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:556604/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:543747/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:492408/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:534965/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:532633/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:496917/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:520310/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:526263/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:527882/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:530648/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:823158/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:972671/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:939536/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:8902/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:87722/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:858243/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:851735/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:837210/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:834350/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:833859/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:833155/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:82550/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:582337/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:816200/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:806290/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:776517/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:765734/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:752635/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:747024/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:738616/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:317359/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:680815/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:643838/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1218441/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1442836/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1414998/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1396831/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1394617/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1313016/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1268801/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1253813/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1246939/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1242560/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:124104/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:14491/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1203836/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1190290/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1186321/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1168888/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:112362/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1121699/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1096683/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1067416/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1036738/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1646481/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:398957/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:375487/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:344334/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:343550/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:283820/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:278102/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:240140/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:205937/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:200829/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:200307/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:411736/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1604919/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1576685/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:156888/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1555750/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1554872/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1509633/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:147970/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:1478074/1‑62 (MQ=255)
ttcttctGACAGTTCCCGCCGTCTCTCAGCCTCAGCGTTCCCCAACACACTGCCCGGTACCg > 1:565286/1‑62 (MQ=255)
|
TTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCG > W3110S.gb/523279‑523340
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
