Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
743,908 |
T→C |
R220R (CGT→CGC) |
ybgI → |
conserved metal‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 743,908 | 0 | T | C | 100.0%
| 799.8
/ NA
| 270 | R220R (CGT→CGC) | ybgI | conserved metal‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/270); total (0/270) |
Only 100 of 270 total aligned reads displayed.
GAGCAGGGATTGCATTTTTATGCTGCAGGTCACCATGCCACTGAACGTGGTGGTATTCGCGCA > W3110S.gb/743861‑743923
|
gAGCAGGGATTGCA‑TTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:737898/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:371916/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:598869/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:579342/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:565024/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:545881/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:537876/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:493841/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:489971/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:458281/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:427763/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:398106/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:619782/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:359089/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:332234/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:326419/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:306624/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:295506/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:275091/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:266119/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1004633/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:240155/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:21895/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:207332/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:809031/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:989754/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:956551/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:92820/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:904322/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:886795/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:871090/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:837819/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:835718/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:822912/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:819708/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:258604/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:792600/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:777188/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:757832/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:703356/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:691023/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:687167/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:669432/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:643790/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:629631/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:623342/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1191326/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1349454/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1342866/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:177289/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1300903/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1289691/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1279328/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1253454/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1228190/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1221900/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1209009/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1199972/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1314107/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1183153/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1171911/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1160091/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1148459/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:109800/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1063244/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1044209/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1033548/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1027623/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1020577/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1012248/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1632095/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1608807/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1589041/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1618032/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1549232/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1383596/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1623017/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1525377/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1522342/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1598927/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1644402/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1489870/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1476307/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1470546/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1434229/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1414402/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1403314/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1390352/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:166711/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTCGTATTCGCGCa < 1:1539923/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGGGGTATTCGCGCa < 1:720111/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACCGAACGCGGTGGTATTCGCGCa < 1:84416/62‑1 (MQ=255)
aGCAGGGATTGCATTTTTATGCTGCGGCTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:362244/62‑1 (MQ=255)
gCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:867842/61‑1 (MQ=255)
gCAGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:71505/61‑1 (MQ=255)
gCAGGGATTGCATTTTTATGCTGCGGGGCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1106264/61‑1 (MQ=255)
aGGGATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:762797/59‑1 (MQ=255)
gggATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:1567218/58‑1 (MQ=255)
ggATTGCATTTTTATGCTGCGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:607280/57‑1 (MQ=255)
gctgcGGGTCACCATGCCACTGAACGCGGTGGTATTCGCGCa < 1:404626/42‑1 (MQ=38)
|
GAGCAGGGATTGCATTTTTATGCTGCAGGTCACCATGCCACTGAACGTGGTGGTATTCGCGCA > W3110S.gb/743861‑743923
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
