Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,738,453 |
A→G |
G184G (GGT→GGC) |
ydhP ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,738,453 | 0 | A | G | 100.0%
| 159.8
/ NA
| 56 | G184G (GGT→GGC) | ydhP | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/56); total (0/56) |
CGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGTGCCCCTGCACCACCTTTAGGTAA > W3110S.gb/1738406‑1738467
|
cgaaTTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:678583/59‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:634315/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1009006/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:278216/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:286629/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:289919/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:365644/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:443786/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:513843/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:534697/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:540079/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:542481/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:581226/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:587239/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:625762/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:273434/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:651616/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:660910/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:75198/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:753684/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:764863/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:770160/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:770246/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:818526/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:948960/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:970185/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:986563/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1269317/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1031444/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1036980/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1064085/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1069559/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1076959/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1083000/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:11296/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:113475/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1134873/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1144836/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1243352/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1245254/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:254625/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1275849/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1406719/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1412023/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1456803/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1466901/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1495451/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1544479/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1550027/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1551884/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1581259/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:1652045/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:175683/62‑1 (MQ=255)
cGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGCGCCCCCGCGCCACCTTTAGGTaa < 1:1204278/62‑1 (MQ=255)
cGCATTAATACCGCAAGCTCTTTTTTCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:344154/62‑1 (MQ=255)
ttttCACTTCAGGTCGCGCCCCTGCGCCACCTTTAGGTaa < 1:661252/40‑1 (MQ=38)
|
CGCATTAATACCGCCAGCTCTTTTTTCACTTCAGGTCGTGCCCCTGCACCACCTTTAGGTAA > W3110S.gb/1738406‑1738467
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
