Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,948,614 |
C→T |
Q159Q (CAG→CAA) |
ruvC ← |
component of RuvABC resolvasome, endonuclease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,948,614 | 0 | C | T | 100.0%
| 375.3
/ NA
| 132 | Q159Q (CAG→CAA) | ruvC | component of RuvABC resolvasome, endonuclease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/132); total (0/132) |
Only 100 of 132 total aligned reads displayed.
GCGATTCGCTCATCTGCATCGCATTCTGACTAACG > W3110S.gb/1948601‑1948635
|
gcgATTCGCTCATTTTCATCGCATTCTGACTAACg < 1:277031/35‑1 (MQ=25)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:492063/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:622157/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:607910/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:581576/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:578778/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:567519/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:554204/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:549871/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:534822/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:513183/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:511137/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:510308/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:494754/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:663684/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:487384/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:46669/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:464071/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:451878/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:406156/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:385974/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:373386/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:361331/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:346543/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:324089/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:775358/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:979853/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:975720/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:972700/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:955276/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:929507/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:927764/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:885963/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:859130/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:844454/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:814526/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:807530/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:782804/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:321057/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:769302/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:76649/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:75781/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:757077/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:746714/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:740052/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:727084/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:714352/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:705545/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:70319/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:69954/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1127484/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1015198/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1201387/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1195949/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:118457/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1181764/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1175388/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1168326/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1154032/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1147277/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1145968/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1134759/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1134030/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1202849/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1126441/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1124673/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1113597/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1109841/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1108153/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1066154/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1063196/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1055776/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1029031/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1028794/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1028595/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1566652/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:29208/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:283525/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:244078/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:229393/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:220174/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:171291/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:168593/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1647589/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1621405/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1620393/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1596509/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1227036/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1525333/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1518985/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1473384/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1444777/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1405330/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1359561/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1307702/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1299100/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1253106/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:125249/35‑1 (MQ=255)
gcgATTCGCTCATTTGCATCGCATTCTGACTAACg < 1:1250594/35‑1 (MQ=255)
gcgATTAGCTCATTTGCATCGCATTCTGACTAACg < 1:851515/35‑1 (MQ=25)
|
GCGATTCGCTCATCTGCATCGCATTCTGACTAACG > W3110S.gb/1948601‑1948635
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
