Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,992,525 |
G→C |
T236T (ACG→ACC) |
tyrP → |
tyrosine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,992,525 | 0 | G | C | 100.0%
| 345.7
/ NA
| 118 | T236T (ACG→ACC) | tyrP | tyrosine transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (0/118); total (0/118) |
Only 100 of 118 total aligned reads displayed.
CGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGGCAGCATT > W3110S.gb/1992477‑1992537
|
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCCGCTGGCGACCCTTGCCAGCAtt < 1:1496302/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCGTTGGCAGCAtt < 1:405011/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:332630/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:57322/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:534718/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:534019/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:467430/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:425094/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:414708/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:363845/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:357921/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:336439/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:603730/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:308391/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:307009/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:290405/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:289855/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:260389/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:251560/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:249220/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:229934/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:226467/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:101276/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:198557/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:766732/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:97385/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:96613/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:941991/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:857662/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:841703/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:835772/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:825225/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:813437/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:808899/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:788299/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:768391/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:222855/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:764336/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:763344/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:728234/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:718674/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:677441/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:671221/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:660256/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:634560/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:626962/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:626769/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:60672/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1200635/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:193804/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1326383/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1314148/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1311864/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:130999/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1309031/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:129982/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1277723/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1243246/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1204631/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1202626/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1368973/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1181047/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1168150/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1151289/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1149115/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1141460/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1121804/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1089734/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1061080/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1048688/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1044238/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1024839/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1544464/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:190653/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:183016/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:178876/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:168762/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:166375/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1643939/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:163311/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1605214/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1595659/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1574115/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1552160/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1380944/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1505021/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1494994/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1482854/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1471509/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1450531/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1429732/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1390508/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGAAGCTGGCGACCCTTGGCAGCAtt < 1:145716/61‑1 (MQ=255)
cGGTAGTGCGATCCCCCTGGTGGCATATATTATCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:961635/61‑1 (MQ=255)
tAGTGCGATCCCCGTGGTGGCATATATTTTCTGGGAGCTGGCGACCCTTGGCAGCAtt < 1:13704/58‑1 (MQ=255)
tAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:517440/58‑1 (MQ=255)
cGATCCCCCTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:1505512/53‑1 (MQ=255)
ccTGGTGGCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:559104/46‑1 (MQ=39)
tggCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:892537/41‑1 (MQ=38)
gCATATATTTTCTGGCAGCTGGCGACCCTTGGCAGCAtt < 1:631378/39‑1 (MQ=37)
|
CGGTAGTGCGATCCCCCTGGTGGCATATATTTTCTGGCAGGTGGCGACGCTTGGCAGCATT > W3110S.gb/1992477‑1992537
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
