Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,012,092 |
A→T |
L45L (CTA→CTT) |
yedK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,012,092 | 0 | A | T | 100.0%
| 200.6
/ NA
| 71 | L45L (CTA→CTT) | yedK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (0/71); total (0/71) |
AAAGTCCTACTGCTCAGTGAACGTGATGAACACCTTCATCTGG > W3110S.gb/2012084‑2012126
|
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:324955/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:657887/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:647603/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:632419/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:605032/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:546368/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:516516/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:337979/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:325962/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:671862/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:29900/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:28770/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:262299/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:213992/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:174545/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1641236/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1638610/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1029187/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:871181/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:998786/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:988301/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:943349/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:923414/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:907204/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:899462/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:882503/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:873855/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1625005/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:829772/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:755724/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:752069/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:743544/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:741750/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:693613/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:685878/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1105686/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1233751/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1222879/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1211165/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1208536/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1205978/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1194672/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1151209/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1110879/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1251854/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1101558/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1100221/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1081376/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1078610/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1069563/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1044360/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1037791/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1037668/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1374055/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1505031/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1499470/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1469563/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:146419/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1450830/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1406037/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1587307/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1336041/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:13250/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1321812/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1293232/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1280512/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1274433/43‑1 (MQ=255)
aaaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1272301/43‑1 (MQ=255)
aaaGTCCATCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:27928/43‑1 (MQ=38)
aaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:517547/42‑1 (MQ=255)
aaGTCCTTCTGCTCAGTGAACGTGATGAACACCTTCATCTgg < 1:1475895/42‑1 (MQ=255)
|
AAAGTCCTACTGCTCAGTGAACGTGATGAACACCTTCATCTGG > W3110S.gb/2012084‑2012126
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
