Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,031,954 |
C→G |
D78E (GAC→GAG) |
idi → |
isopentenyl diphosphate isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,031,954 | 0 | C | G | 100.0%
| 316.2
/ NA
| 108 | D78E (GAC→GAG) | idi | isopentenyl diphosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (108/0); total (108/0) |
Only 100 of 108 total aligned reads displayed.
GGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCGCCGTTGCCGTTATGAGCTT > W3110S.gb/3031922‑3031984
|
gggCCCCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:758131/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCgccgttgcc > 1:1305917/1‑52 (MQ=39)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCgccgtt > 1:1409245/1‑49 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATg > 1:1532728/1‑58 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGc > 1:1321249/1‑61 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:507527/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:665232/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:649369/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:644588/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:636335/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:588521/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:567083/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:560696/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:54848/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:696453/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:497351/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:46271/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:448535/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:386695/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:365009/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:355307/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:287096/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:285686/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:274358/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:255099/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:247568/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:221374/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:871601/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:988459/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:988223/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:982412/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:973322/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:932936/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:928897/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:927925/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:927252/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:91554/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:912277/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:903016/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:675810/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:829033/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:814815/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:808088/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:796605/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:771573/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:766435/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:750769/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:733300/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:711666/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:208799/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:692238/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1184650/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1355974/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1348137/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1322535/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:131698/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1315793/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1301999/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1276705/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1262365/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1253961/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1235693/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1232441/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1213812/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1393179/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1180714/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1170898/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1163423/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1150856/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1124492/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1094511/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1084073/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1079951/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1048875/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1046876/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1041638/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1417611/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1022513/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:196386/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:191347/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:184292/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:182763/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:169478/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1643941/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1640261/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1620381/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1617358/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1615336/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:15934/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1586269/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1575456/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1564028/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1533100/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1524855/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1523326/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1508920/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:1445564/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCt > 1:210282/1‑62 (MQ=255)
gggCACCCACAACTGGGAGAAAGCAACG‑AGAGGCGGTGATCCGCCGTTGCCGTTATGAGCtt > 1:214630/1‑62 (MQ=255)
ggCACCCACAACTGGGAGAAAGCAACGAAGAGGCGGTGATCCGCCGTTGCCGTTATGAGCtt > 1:242598/1‑62 (MQ=255)
|
GGGCACCCACAACTGGGAGAAAGCAACGAAGACGCAGTGATCCGCCGTTGCCGTTATGAGCTT > W3110S.gb/3031922‑3031984
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
