Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,509,026 |
T→C |
H80H (CAT→CAC) |
yiiX → |
predicted peptidoglycan peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,509,026 | 0 | T | C | 100.0%
| 751.8
/ NA
| 255 | H80H (CAT→CAC) | yiiX | predicted peptidoglycan peptidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (255/0); total (255/0) |
Only 100 of 255 total aligned reads displayed.
ATACACCCCGCTCAAGCAGTGGATCGCCCATGGTGAAAAGGGCAAATACGTTGTTCGCCGCG > W3110S.gb/3508996‑3509057
|
aTACACCCCGCTCAAGCAGTGGATCGCCCCCGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:938202/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGaa > 1:338648/1‑37 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAATTACATTGTTCGCcgcg > 1:35259/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACattgtt > 1:610789/1‑55 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:37644/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:1325413/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:1334651/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:1389454/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:1151492/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:1652027/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccgc > 1:328630/1‑61 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgccg > 1:1526534/1‑60 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTcgc > 1:1052003/1‑58 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCctcg > 1:244414/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:411128/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:534969/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:526343/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:493961/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:549204/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:556579/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:489652/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:481029/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:458801/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:44548/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:442040/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:301422/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:402012/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:382631/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:344836/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:316546/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:986425/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:762783/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1008067/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:976818/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:968691/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:919401/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:910441/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:885636/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:866553/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:84623/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:800337/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:791824/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:77010/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:56600/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:734894/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:727364/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:688020/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:682817/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:663227/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:647581/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:630160/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:599087/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:591453/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:585492/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1163548/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:290054/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1366530/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1364728/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1339614/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1314862/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1277044/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1250797/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:124520/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1221252/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:120206/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1171815/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1389348/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1136220/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1087958/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1075213/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1072563/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1063890/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1054505/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:104052/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1030543/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1024936/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1014290/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1584727/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:276189/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:263018/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:219423/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:214315/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:201035/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:188644/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1640735/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1613633/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:16007/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1400820/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1570308/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:15625/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1559475/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1553836/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1550061/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1533546/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1455592/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1434759/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1402167/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCCACGCTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1466454/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGATCGCCAACGGTGAAGATGGCAAATACATTGTTCGCcgcg > 1:1624417/1‑62 (MQ=255)
aTACACCCCGCTCAAGCAGTGGAACGCCCACGGTGAAGATGGCAAAt > 1:950261/1‑47 (MQ=255)
|
ATACACCCCGCTCAAGCAGTGGATCGCCCATGGTGAAAAGGGCAAATACGTTGTTCGCCGCG > W3110S.gb/3508996‑3509057
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
