Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,737,643 |
A→C |
G118G (GGA→GGC) |
yieK → |
predicted 6‑phosphogluconolactonase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,737,643 | 0 | A | C | 100.0%
| 803.9
/ NA
| 275 | G118G (GGA→GGC) | yieK | predicted 6‑phosphogluconolactonase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (275/0); total (275/0) |
Only 100 of 275 total aligned reads displayed.
TACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGACTGGATTTG > W3110S.gb/3737605‑3737652
|
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTg > 1:955228/1‑42 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGAttt > 1:1023773/1‑47 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGAttt > 1:972116/1‑47 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:413796/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:596566/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:568036/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:54272/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:530547/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:517466/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:509696/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:502770/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:492964/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:485006/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:464964/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:445429/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:599182/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:388867/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:387876/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:376880/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:359866/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:337732/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:311160/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:298787/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:295107/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:275359/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:262337/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1043182/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:811862/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1018631/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:963984/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1034949/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:943361/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:934507/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:914177/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:896790/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:896066/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:879489/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:853216/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:848156/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:242710/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:78925/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:76110/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:748863/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:745506/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:740263/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:729029/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:711721/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:692517/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:66301/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:627629/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:61416/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1245346/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:234268/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1374541/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:13511/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1327669/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1320629/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1312235/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1303364/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1288788/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1280228/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1273436/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1262196/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1409037/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:123240/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1203286/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1181951/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1172229/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1145736/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1139267/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:112978/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1110792/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1095223/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1075272/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1050160/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1434252/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:216711/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:209316/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:203840/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:194126/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:173375/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:165541/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1644745/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1626958/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1595529/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1578826/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1572770/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1557753/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1546608/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1536964/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1517793/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1498298/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1482061/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1480161/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1468660/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1457799/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1455286/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:1423450/1‑48 (MQ=255)
tACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGCCTGGATAtg > 1:827474/1‑48 (MQ=38)
tACCGCGAGCATGATCAAAAACTGGCGCGTGAAGGCGGCCTGGATTtg > 1:890913/1‑48 (MQ=39)
|
TACCGCGAGCATGATCAGAAACTGGCGCGTGAAGGCGGACTGGATTTG > W3110S.gb/3737605‑3737652
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
