Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,233,630 |
C→T |
V35V (GTG→GTA) |
pepE ← |
(alpha)‑aspartyl dipeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,233,630 | 0 | C | T | 100.0%
| 382.6
/ NA
| 134 | V35V (GTG→GTA) | pepE | (alpha)‑aspartyl dipeptidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/134); total (0/134) |
Only 100 of 134 total aligned reads displayed.
AAGGGATAAACACCGCTGAGCGGCGACCCTGCAACTGTTCAGCAATTAGCGGCAGTGCATGT > W3110S.gb/4233620‑4233681
|
aaGGAATAAATACCGCAGGACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1472254/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATGAGCGGCAGCGCgtgt < 1:310212/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:709564/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:712616/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:659254/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:653229/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:64780/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:627886/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:57357/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:567250/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:557495/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:556155/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:545738/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:530345/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:505238/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:459475/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:4397/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:433936/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:381856/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:369529/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:350222/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:34579/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:339626/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:337208/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:318546/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:833496/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:967791/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:966318/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:937748/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:931406/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:929905/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:926204/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:921001/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:894242/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:885651/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:882973/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:867379/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:83369/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:281327/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:833262/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:823844/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:822028/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:799281/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:78764/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:783514/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:774421/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:751533/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:744588/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:742350/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:728923/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:114533/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1018996/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1333279/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1295032/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1294319/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:128513/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1261455/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1251931/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1251322/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1191259/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1180977/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1171294/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1373040/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1144211/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1112836/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1108491/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1106182/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1104144/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1094606/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1093663/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1074632/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:104261/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1037286/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:102298/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1574744/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:244877/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:230708/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:219420/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:215390/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:177295/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:165303/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1650190/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1646396/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1583550/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1582241/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1378896/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1560906/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1554227/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1551213/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1538394/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1529295/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1520275/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1435441/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1398459/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1397178/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1393237/62‑1 (MQ=255)
aaGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATAAGCGGCAGCGCgtgt < 1:1025222/62‑1 (MQ=255)
aGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:561468/61‑1 (MQ=255)
aGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:1487191/61‑1 (MQ=255)
aGGAATAAATACCGCAGAACGGCGACCCTGCAACTGTTCAGCAATCAGCGGCAGCGCgtgt < 1:104483/61‑1 (MQ=255)
|
AAGGGATAAACACCGCTGAGCGGCGACCCTGCAACTGTTCAGCAATTAGCGGCAGTGCATGT > W3110S.gb/4233620‑4233681
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
