Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,463,510 |
C→A |
T290T (ACC→ACA) |
pmbA → |
predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,463,510 | 0 | C | A | 100.0%
| 409.0
/ NA
| 142 | T290T (ACC→ACA) | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (0/142); total (0/142) |
Only 100 of 142 total aligned reads displayed.
AAACAAATTCTGCCGGACTGGCTGACCATTGAAGAGCATCCGCATCTGCTGAAAGGGCTGGC > W3110S.gb/4463484‑4463545
|
acaCAAATTCTTCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:63443/60‑1 (MQ=255)
acaCAAATTCTGCCTGACTGGCTGACAATTGAAGAACATCCTCATCTGCTGAAAGGGCTGGc < 1:1044973/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:533441/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:669185/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:658118/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:655045/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:653730/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:6526/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:650215/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:62519/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:618284/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:550009/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:542007/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:53773/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:671805/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:528527/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:476607/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:46459/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:437567/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:429133/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:422322/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:372508/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:372128/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1012070/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:302976/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:867767/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:996028/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:987613/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:974182/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:957923/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:948428/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:946785/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:940056/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:92937/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:926149/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:917476/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:90447/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:326569/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:85585/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:848779/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:784306/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:777466/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:761346/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:758712/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:727142/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:718370/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:688111/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:679033/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:120512/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1537790/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1448252/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1413312/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1393459/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1335282/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1331491/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1303850/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1283187/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1277263/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1233212/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1219511/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1468560/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1179214/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1161650/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1159507/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:113997/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1138266/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1125401/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1113372/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1084595/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1034302/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1023002/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:101967/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:172212/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:261879/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:249835/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:246120/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:233730/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:223306/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:212368/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:211802/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:205518/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:185105/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1647522/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1599157/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1557488/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1562169/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1587075/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1597486/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1639952/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1634271/60‑1 (MQ=255)
acaCAAATTCTGCCGGACTGGCCGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1270240/60‑1 (MQ=255)
caCAAATTCTTCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:398837/60‑1 (MQ=255)
caCAAATTCTGCCGGACTGGCTGTCAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:40324/60‑1 (MQ=255)
caCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:454746/60‑1 (MQ=255)
caCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1616363/60‑1 (MQ=255)
caCAAATTCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1398341/60‑1 (MQ=255)
ttCTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:1543011/55‑1 (MQ=255)
cTGCCGGACTGGCTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:736954/53‑1 (MQ=39)
cTGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:442052/41‑1 (MQ=38)
tGACAATTGAAGAACATCCGCATCTGCTGAAAGGGCTGGc < 1:27927/40‑1 (MQ=37)
|
AAACAAATTCTGCCGGACTGGCTGACCATTGAAGAGCATCCGCATCTGCTGAAAGGGCTGGC > W3110S.gb/4463484‑4463545
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
