Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,439,105 |
G→T |
intergenic (‑19/+93) |
yojL ← / ← ompC |
predicted thiamine biosynthesis lipoprotein/outer membrane porin protein C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,439,105 | 0 | G | T | 100.0%
| 295.9
/ NA
| 86 | intergenic (‑19/+93) | yojL/ompC | predicted thiamine biosynthesis lipoprotein/outer membrane porin protein C |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (36/50); total (36/50) |
GCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGAAAA > minE/1439049‑1439160
|
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2764734/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1898246/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1974954/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2014798/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2093831/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2112044/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2263213/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2492379/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2526508/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2540386/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2582991/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:262448/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2703127/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2756084/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:292865/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:2957703/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:315149/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:3518664/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:3611954/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:648544/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:673519/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:77083/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:860434/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:922247/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:939318/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:971677/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1192421/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1354997/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1167136/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1158390/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1137336/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1663771/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1664204/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1711271/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1319073/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1809125/62‑1 (MQ=255)
gCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:1824121/62‑1 (MQ=255)
cagccagcAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCTAACgg < 1:3434642/61‑1 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTac > 1:404959/1‑41 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTa > 1:1105784/1‑61 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3447756/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:617925/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:874069/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:331267/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3328871/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3342161/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:33938/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3409247/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:558530/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:349478/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:537148/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:304293/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:429935/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:42565/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3543277/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1660322/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1833251/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2017171/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2044219/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1754259/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2262488/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:175072/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2322299/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1860314/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3150668/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1631683/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2770547/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2809428/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2817523/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:2918659/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1486688/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:1479177/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3052400/1‑62 (MQ=255)
tCCATACGTGATTATCCTCATGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTAc > 1:3140626/1‑62 (MQ=255)
aTGCTAATGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1201630/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:714432/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1130012/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1312952/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:418428/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:3526865/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1332852/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:3184440/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1560292/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:1644507/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGaaaa < 1:2426204/60‑1 (MQ=255)
aTGCTAACGGTCGCAAGAGTACACCAAAAAACTCAGTTTGTACGCTGAAAACAATGaaaa < 1:335124/60‑1 (MQ=255)
|
GCAGCCAGCAGTGCCACGCGGGTAAAGCTTATTTCCATACGTGATTATCCTCATGCGAACGGTCGCAAGAGTACACCAAAAAACTGAGTTTGTACGCTGAAAACAATGAAAA > minE/1439049‑1439160
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
