Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,654,752 |
(T)5→6 |
coding (239/2448 nt) |
glgP → |
glycogen phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,654,747 | 1 | . | T | 100.0%
| 67.0
/ NA
| 22 | E78D (GAG→GAT) | glgP | glycogen phosphorylase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (0/22); total (0/22) |
TCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑TTTTTGATTGGCCGTACGCTCTCCAA > minE/2654691‑2654773
|
tCAAACCGTGTCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1118589/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:357277/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2407065/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2448951/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2498931/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2815755/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2873845/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3172878/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3207114/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3230875/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3234198/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3282594/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3349315/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3411126/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3477297/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3526559/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3528410/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2537043/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3611837/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:3637693/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:402451/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:428225/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:563305/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:657061/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:685113/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:69052/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:746622/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:879921/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:970620/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:978077/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:996071/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2399534/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1082967/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1095563/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1171956/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1181016/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1333233/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1356758/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1437952/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1672236/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1757659/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1951109/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1987406/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2024262/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2404129/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2030057/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2034056/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2102313/62‑1 (MQ=255)
tCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCAGTCGATGGAG‑ttttt < 1:2470979/62‑1 (MQ=255)
tCAAACCGTGCCCAGGTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:1563288/62‑1 (MQ=255)
gTGCGCAGTTGTCGCAAGAAACTCGTCAGGTTTACTTCCTGTCGATGGAG‑ttttt < 1:1443524/55‑1 (MQ=255)
ttGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:2654625/47‑1 (MQ=255)
tGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑ttttt < 1:250167/46‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCaaa < 1:1603/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:535871/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:2644003/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1002943/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1288275/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1248427/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1196935/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:794415/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:892566/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:2454199/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:466462/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:456430/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:3101313/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1475673/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1536362/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1603999/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:3475306/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1741226/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:2956048/62‑1 (MQ=255)
aaGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1987853/62‑1 (MQ=255)
aaGAAACTCGTCAGGGTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:1698256/62‑1 (MQ=255)
aGAAACTCGTCAGGTTTACTACCTGTCGATGGAGTTTTTTGATTGGCCGTACGCTCTCCaa < 1:4469/61‑1 (MQ=255)
|
TCAAACCGTGCCCAGTTGTCGCAAGAAACTCGTCAGGTTTACTACCTGTCGATGGAG‑TTTTTGATTGGCCGTACGCTCTCCAA > minE/2654691‑2654773
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
