Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I0 R1
|
2892 |
75.3 |
5698161 |
66.1% |
3766484 |
59.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,596,169 |
G→T |
22.0% |
A143A (GCC→GCA) |
arsB ← |
arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,596,169 | 0 | G | T | 22.0%
| 156.8
/ 27.1
| 68 | A143A (GCC→GCA) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base G (23/30); new base T (8/7); total (31/37) |
| Fisher's exact test for biased strand distribution p-value = 5.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-01 |
ATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCG > minE/2596100‑2596239
|
aTCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCgg > 1:25208/1‑71 (MQ=255)
gagaCGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt > 1:618636/4‑71 (MQ=255)
gagaCGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt > 1:5038161/4‑71 (MQ=255)
gAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt < 1:332899/71‑1 (MQ=255)
gAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt < 1:5361754/71‑1 (MQ=255)
cGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACg < 1:5620776/71‑1 (MQ=255)
cGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACg < 1:1992297/71‑1 (MQ=255)
cGATATTCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGAca < 1:2088555/71‑2 (MQ=255)
gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGgccgcc < 1:1043670/64‑1 (MQ=255)
gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGa < 1:1032259/71‑1 (MQ=255)
gATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGa < 1:1039141/71‑1 (MQ=255)
ttCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGc < 1:2205322/71‑1 (MQ=255)
ttCACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGc < 1:2890870/71‑1 (MQ=255)
ttCACCAGCTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCAt < 1:2379629/62‑1 (MQ=255)
cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGcc < 1:5543577/70‑1 (MQ=255)
cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGcc < 1:4629170/70‑1 (MQ=255)
cACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGc > 1:3401340/1‑69 (MQ=255)
cACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGcc < 1:2777360/70‑1 (MQ=255)
cAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCg < 1:1548326/71‑1 (MQ=255)
cAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtg > 1:3791224/1‑69 (MQ=255)
aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt > 1:3513260/1‑56 (MQ=255)
aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCAt > 1:3866034/1‑56 (MQ=255)
aGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCa > 1:2594433/1‑67 (MQ=255)
ggTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCg > 1:4563082/1‑69 (MQ=255)
ggTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtgtc > 1:1878442/1‑70 (MQ=255)
ggTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtgtc > 1:2786185/1‑70 (MQ=255)
gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGAcaa < 1:4699307/59‑3 (MQ=255)
gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAgtg < 1:204203/68‑3 (MQ=255)
gagaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCg < 1:4551296/42‑1 (MQ=255)
gagaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGcc < 1:2455605/71‑1 (MQ=255)
gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:1011863/71‑1 (MQ=255)
gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:3078189/71‑1 (MQ=255)
gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:5668941/71‑1 (MQ=255)
gaCAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:2713506/71‑1 (MQ=255)
aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccctg > 1:2704228/1‑68 (MQ=255)
aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGccctg < 1:1373634/71‑4 (MQ=255)
cAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:2081361/70‑1 (MQ=255)
cAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:2206291/70‑1 (MQ=255)
tAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACt > 1:3766970/1‑70 (MQ=255)
aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa < 1:679941/71‑1 (MQ=255)
aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGa < 1:3919204/70‑1 (MQ=255)
aGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATAACGaa > 1:2443821/1‑47 (MQ=255)
aGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACaaa > 1:4412467/1‑47 (MQ=255)
aGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGaa > 1:1293074/1‑71 (MQ=255)
gCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAg < 1:2946016/71‑1 (MQ=255)
gCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCcag > 1:1390934/1‑71 (MQ=255)
tATCGGCAATTAATCCGGCCGCCATCACGAACGCCAGCGt < 1:1241997/40‑1 (MQ=255)
aTCGGCAATGAATCCGGCCGCCATCACGAACGCCa > 1:3517808/1‑35 (MQ=255)
aTCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAg > 1:788957/1‑41 (MQ=255)
aTCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa > 1:4666977/1‑54 (MQ=255)
tCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAgcagca < 1:925310/70‑1 (MQ=255)
ggCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGaa > 1:2865199/1‑51 (MQ=255)
cAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGc > 1:94738/1‑70 (MQ=255)
cAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGc > 1:1820521/1‑70 (MQ=255)
aaTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGa > 1:2228028/1‑71 (MQ=255)
aTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:299745/40‑1 (MQ=255)
aTGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGAt < 1:5395251/71‑1 (MQ=255)
tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGcc < 1:5668350/37‑1 (MQ=255)
tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCtt < 1:5542945/39‑1 (MQ=255)
tGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCca < 1:2866961/57‑1 (MQ=255)
gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAAcc > 1:2135383/1‑47 (MQ=255)
gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGa > 1:4338142/1‑71 (MQ=255)
gAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGa > 1:5329713/1‑71 (MQ=255)
aTCCGGCCGCCATCACGAACGCCAGCGTAGTGCCttt < 1:5331328/37‑1 (MQ=255)
tCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACaa > 1:3221777/1‑71 (MQ=255)
cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:1018803/1‑67 (MQ=255)
cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:1849414/1‑67 (MQ=255)
cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGAc > 1:3868169/1‑67 (MQ=255)
cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATc > 1:2272012/1‑71 (MQ=255)
cGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATc < 1:5071510/71‑1 (MQ=255)
ggCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCg < 1:2678734/71‑1 (MQ=255)
|
ATCAGCGGAAACGATATTCACCAGGTTGGAGACAATAAGCGGCAGGCTGGCGGTATCGGCAATGAATCCGGCCGCCATCACGAACGCCAGCGTAGTGCCTTTACTGAACCCTAAAGCCAGCAGCATGGCGATGACAATCG > minE/2596100‑2596239
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
