Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
338,151 |
T→C |
I201I (ATT→ATC) |
yahG → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 338,151 | 0 | T | C | 100.0%
| 196.3
/ NA
| 69 | I201I (ATT→ATC) | yahG | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/69); total (0/69) |
AGCAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATTGACC > W3110S.gb/338102‑338155
|
agcAGATGGCGAAGATTTTGCGTATTGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1015825/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATTGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1091917/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGTGCGCTAACGACCAGAGCGTGATCGAcc < 1:1202371/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGGGTGATCGAcc < 1:649286/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:445713/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:585891/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:581883/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:579824/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:573749/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:507429/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:501633/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:476124/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:617233/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:418970/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:415295/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:40881/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:358383/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:351627/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:349361/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:349025/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:603959/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:611197/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:304106/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:647760/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:671217/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:770139/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:842680/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:852050/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:853782/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:876097/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:897177/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:928041/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:955643/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:990182/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:994498/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1275193/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1010521/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1021257/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1051754/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1068559/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1137507/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1153686/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1172231/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1177464/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1196587/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1199909/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1217398/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1231207/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1236732/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1271453/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1008447/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1398919/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:298159/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:280242/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:245433/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:217289/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:161128/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1441821/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1278960/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1385609/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1362182/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1316937/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1301298/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:1298054/54‑1 (MQ=255)
agcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCACAGCGTGATCGAcc < 1:1098951/54‑1 (MQ=39)
agcAGATGGCGAAGATTTTGCGTATGGACGCTAACGACCAGAGCGTGATCGAcc < 1:522865/54‑1 (MQ=255)
gcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:828622/53‑1 (MQ=255)
gcAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:480872/53‑1 (MQ=255)
tttGCGTATGGGCGCTAACGACCAGAGCGTGATCGAcc < 1:207580/38‑1 (MQ=255)
|
AGCAGATGGCGAAGATTTTGCGTATGGGCGCTAACGACCAGAGCGTGATTGACC > W3110S.gb/338102‑338155
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
