Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
839,183 |
G→C |
L149L (CTC→CTG) |
ybiX ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 839,183 | 0 | G | C | 100.0%
| 218.5
/ NA
| 77 | L149L (CTC→CTG) | ybiX | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (0/77); total (0/77) |
GCTGCTGGAGGGATACAACACGAGATCGCCTGCCGGGAGTTTTACCCGATGTTGTCCGAAGG > W3110S.gb/839162‑839223
|
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGTAGTTTTACCCGATGTTGCCCGAAgg < 1:1071043/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGaatg < 1:1468605/62‑3 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:399048/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:532813/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:504426/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:475015/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:45183/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:436309/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:432648/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:407854/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:400669/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:399959/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:544893/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:396829/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:386122/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:385084/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:376556/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:334634/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:333654/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:319661/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:71579/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:980527/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:962899/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:928782/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:859479/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:850023/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:827442/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:812633/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:73506/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:313764/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:704279/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:689544/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:687664/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:654740/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:639571/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:598609/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:594687/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:557455/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1109470/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1007205/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1241031/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1203978/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1187014/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1171965/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1165071/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1153959/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1117212/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:111466/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1254217/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1103956/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1059460/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1057694/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1054275/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1048422/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1021689/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1018524/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:10161/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1433540/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:306056/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:302486/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:28672/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:251655/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:250528/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:220603/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:214165/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1467487/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1259604/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1428192/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1413112/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1377551/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:131106/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1269861/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:126634/62‑1 (MQ=255)
gctgctGGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:1264160/62‑1 (MQ=255)
ctgctgGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:633559/61‑1 (MQ=255)
ctgctgGAGGGATACAACACCAGATCGCCTGCCGGGAGTTTTACCCGATGTTGCCCGAAgg < 1:927180/61‑1 (MQ=255)
ctgctgGAGGGATACAACACCAGATCGCCTGCCGGGAGGTTTACCCGATGTTGCCCGAAgg < 1:429002/61‑1 (MQ=255)
|
GCTGCTGGAGGGATACAACACGAGATCGCCTGCCGGGAGTTTTACCCGATGTTGTCCGAAGG > W3110S.gb/839162‑839223
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
