Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
994,011 |
T→A |
G152G (GGA→GGT) |
ssuB ← |
alkanesulfonate transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 994,011 | 0 | T | A | 100.0%
| 209.7
/ NA
| 77 | G152G (GGA→GGT) | ssuB | alkanesulfonate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (77/0); total (77/0) |
GGCGTCCAGCGCCCCGAGCGGTTCATCAAGCAACAATAATCCCGGTCGATGAATCAACGCTC > W3110S.gb/993972‑994033
|
agCGTCCAGCGCACCGAGTGGTTCATCAAGCTACAATAAACCTGGTCGATGAATCAgcgccc > 1:1123055/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:486736/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:678549/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:634394/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:633985/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:612784/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:60333/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:593777/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:546677/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:544659/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:498458/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:684579/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:485537/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:460121/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:454760/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:420653/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:416351/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:414015/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:410527/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:379912/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:866371/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:988123/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:986399/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:975726/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:966226/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:960560/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:956581/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:921019/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:879784/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:879519/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:680293/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:840986/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:83312/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:788102/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:786889/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:759984/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:727185/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:686088/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:343868/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1222620/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1354616/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1325957/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1306752/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1292052/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1271961/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1265730/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:126111/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1236178/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1233710/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1355115/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1176261/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1157394/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1141478/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1130390/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1110172/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1101696/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1097902/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1057309/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1360776/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:335069/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:33395/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:290919/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:289694/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:246438/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:241129/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:238994/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:197294/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:192128/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:147442/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1455019/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1423901/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1401159/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1398836/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1382253/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1364846/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgccc > 1:1056128/2‑60 (MQ=255)
agCGTCCAGCGCACCGAGTGGTTCATCAAGCAACAATAAACCTGGTCGATGAATCAgcgcca > 1:511730/2‑60 (MQ=255)
|
GGCGTCCAGCGCCCCGAGCGGTTCATCAAGCAACAATAATCCCGGTCGATGAATCAACGCTC > W3110S.gb/993972‑994033
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
