Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,120,168 |
G→A |
V152V (GTC→GTT) |
yceJ ← |
predicted cytochrome b561 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,120,168 | 0 | G | A | 100.0%
| 353.1
/ NA
| 127 | V152V (GTC→GTT) | yceJ | predicted cytochrome b561 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/127); total (0/127) |
Only 100 of 127 total aligned reads displayed.
TGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCG > W3110S.gb/1120119‑1120180
|
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTTCTACAACGCTCCAcgcg < 1:1312861/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:469565/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:603108/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:601635/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:600687/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:597298/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:574008/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:573589/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:572715/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:551233/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:524700/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:499701/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:608221/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:466073/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:46515/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:45889/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:422923/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:411968/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:378939/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:37840/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:3700/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:311785/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:302454/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:802893/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:973383/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:939404/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:932328/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:930389/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:903274/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:887912/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:875686/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:86081/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:831732/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:831331/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:805821/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:355946/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:792217/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:758475/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:71883/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:705838/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:684544/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:680244/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:659906/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:656887/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:639956/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:638320/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1146309/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1247969/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1237210/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1216556/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:296226/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1215066/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1212470/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1187962/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1185067/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1169521/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:116077/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1158058/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1215535/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1127338/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1106285/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1105450/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1100509/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1081132/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1075342/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1066646/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:106340/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1041756/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1030789/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1011291/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1298139/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:262345/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:227989/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:220836/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:216481/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:208032/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:166409/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:164198/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:147071/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1448019/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1429373/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1422055/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1258224/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1298321/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1307578/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1348854/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1355288/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:138230/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1399391/62‑1 (MQ=255)
tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACCGACAGTACTACAACGCTCCAcgcg < 1:1006075/62‑1 (MQ=255)
aaaTGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:862864/60‑1 (MQ=255)
aaaTGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:723725/60‑1 (MQ=255)
atgatgCTTCAGGTCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:956082/58‑1 (MQ=255)
atgatgCTTCAGGGCCATAAATCCGGGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:644517/58‑1 (MQ=255)
cTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1109691/52‑1 (MQ=255)
cAGGGCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:532489/49‑1 (MQ=255)
gggCCATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:829145/47‑1 (MQ=255)
cATAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:1452153/43‑1 (MQ=255)
aTAAATCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:953850/42‑1 (MQ=255)
aaTCCGTGCATAACGGACAGTACTACAACGCTCCAcgcg < 1:323740/39‑1 (MQ=255)
|
TGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCG > W3110S.gb/1120119‑1120180
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
