Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,955,965 |
C→T |
I270I (ATC→ATT) |
yecP → |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,955,965 | 0 | C | T | 100.0%
| 370.8
/ NA
| 133 | I270I (ATC→ATT) | yecP | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (133/0); total (133/0) |
Only 100 of 133 total aligned reads displayed.
CCTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTAGATATCCGCA > W3110S.gb/1955912‑1955969
|
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCgaa > 1:599251/1‑56 (MQ=38)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:1390505/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:949000/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:900222/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:838799/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:50156/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:634009/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:61017/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:591241/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:582496/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:573711/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:557905/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:528659/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:522681/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:522213/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:509527/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:678189/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:496448/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:48430/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:482860/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:481971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:466492/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:461242/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:453044/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:437740/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:418419/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:41239/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:365313/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:845467/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:995861/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:994112/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:970138/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:957121/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:926092/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:892422/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:890615/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:881773/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:879268/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:863131/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:850744/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:657192/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:796971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:78566/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:776971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:758535/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:735863/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:728966/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:722487/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:717987/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:705556/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:364125/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1122779/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1336780/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1336231/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1327203/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1298708/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1298451/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1263685/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1221188/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1199275/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1197674/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1178197/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1175881/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1157530/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1388950/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1092651/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1086373/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:106829/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1056373/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:105528/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1042638/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1038823/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1038294/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:101001/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1009590/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1008492/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:191653/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:357318/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:348788/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:346557/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:317108/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:304540/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:292927/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:282002/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:251605/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:247596/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:215646/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:205313/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1007138/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:191318/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:180358/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:168143/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:156643/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1471811/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1465969/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1445406/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:14381/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1432194/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1398592/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCAGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:149235/1‑58 (MQ=38)
|
CCTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTAGATATCCGCA > W3110S.gb/1955912‑1955969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
