Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,454,453 |
G→T |
G134G (GGG→GGT) |
yfcN → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,454,453 | 0 | G | T | 100.0%
| 83.2
/ NA
| 32 | G134G (GGG→GGT) | yfcN | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (0/32); total (0/32) |
TGTGTTTTGCGCCTGCGTGATGCATGGGCACGGGAAGCATATTTTGAAGCAACAAACACCGC > W3110S.gb/2454420‑2454481
|
tgtgTTTTGCGCCTGTGTGATGCATGGTCATTGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1412352/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1043425/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:980327/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:88918/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:868052/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:843496/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:78022/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:539653/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:473086/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:233481/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:144561/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1438267/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1401687/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1384330/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1040604/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1051692/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1064518/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1143482/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1187615/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1201624/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1211326/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1366760/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:138163/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1394885/62‑3 (MQ=255)
tgtgTTTTGCGCCTGTGTGATGCATGGGCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1435147/62‑3 (MQ=255)
gtgtTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:532607/61‑3 (MQ=255)
gtgtTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1181872/61‑3 (MQ=255)
gtgtTTTGCGCCTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:909900/61‑3 (MQ=255)
gtgtTTTGCGCCTGTGTGATGCATGGGCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1452368/61‑3 (MQ=255)
ccTGTGTGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:552633/51‑3 (MQ=255)
tGATGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:1118440/45‑3 (MQ=255)
aTGCATGGTCATGGTAAGCATATTTTGAAGCAGCAAACGccac < 1:777963/43‑3 (MQ=19)
|
TGTGTTTTGCGCCTGCGTGATGCATGGGCACGGGAAGCATATTTTGAAGCAACAAACACCGC > W3110S.gb/2454420‑2454481
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
