Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,642,892 |
(T)5→6 |
coding (48/1155 nt) |
yfgB ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,642,887 | 1 | . | T | 100.0%
| 73.9
/ NA
| 28 | I18N (ATC→AAC) | yfgB | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (0/28); total (0/28) |
GGTTGAGATCCAGCAGGTTGA‑TTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTAA > W3110S.gb/2642867‑2642927
|
ggTTGAGATCCAGCTGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1133900/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTTGTGACGTTTTCAGGTGTGACTaa < 1:1348943/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:14847/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:997672/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:995706/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:994010/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:978195/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:857530/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:83909/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:796624/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:553157/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:454070/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:269117/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:266698/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:187808/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:176998/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1023005/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1353607/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1343981/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1325523/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1242470/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:118137/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1162191/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1157916/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1121993/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1117922/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1115303/62‑1 (MQ=255)
ggTTGAGATCCAGCAGGTTGATTTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTaa < 1:1094074/62‑1 (MQ=255)
|
GGTTGAGATCCAGCAGGTTGA‑TTTTTCCATCTTTCGTGGTGACGTTTTCAGGTGTGACTAA > W3110S.gb/2642867‑2642927
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
