Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,788,198 |
A→T |
G186G (GGA→GGT) |
ygaT → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,788,198 | 0 | A | T | 100.0%
| 276.1
/ NA
| 100 | G186G (GGA→GGT) | ygaT | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (100/0); total (100/0) |
TGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTG > W3110S.gb/2788167‑2788227
|
tgaACATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:345922/1‑61 (MQ=255)
tgaAAATCGACGAGCAGATCATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1292059/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCTCTGCTGCTGCATCTCGATg > 1:609959/1‑57 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGAt > 1:1070840/1‑56 (MQ=38)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACt > 1:299535/1‑60 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:553704/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:620827/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:618914/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:61679/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:614730/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:612141/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:607645/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:604957/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:576568/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:574507/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:555591/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:555306/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:629641/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:549317/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:537396/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:533433/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:53123/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:491785/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:467245/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:459317/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:447284/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:441093/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:732978/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:990877/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:988048/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:907932/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:906486/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:90322/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:895092/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:875587/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:847891/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:841658/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:817093/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:806669/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:803528/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:626980/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:720209/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:71776/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:708717/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:699663/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:697726/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:694161/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:668856/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:659595/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:652045/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:631520/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:400754/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:114936/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:428037/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1341823/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1289270/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1271496/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1265751/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1249043/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1240594/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1236727/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1228785/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1196062/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1183650/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1357181/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1146609/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1143698/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1135209/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1127457/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1124644/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1096308/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:108369/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1083354/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1076697/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1032157/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1024893/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:191171/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1006530/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:355019/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:349803/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:345774/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:339276/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:338609/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:315188/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:301005/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:299368/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:223522/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:170208/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:168548/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1469763/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1462835/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1457912/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1447973/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1433312/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1406923/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1403285/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1398864/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGATGACTg > 1:1381885/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTGCATCTCGAAGACTg > 1:1369373/1‑61 (MQ=255)
tgaAAATCGACGAGCAGAACATGCAGGGCGGTAACTCGCTGCTGCTCCATCTCGATGACTg > 1:856710/1‑61 (MQ=255)
|
TGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTG > W3110S.gb/2788167‑2788227
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
