Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,896,416 |
G→A |
V37V (GTC→GTT) |
ygcS ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,896,416 | 0 | G | A | 100.0%
| 152.5
/ NA
| 56 | V37V (GTC→GTT) | ygcS | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/56); total (0/56) |
GGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTG > W3110S.gb/2896386‑2896447
|
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAAGCGTCGGTCAGGtgtg < 1:797713/62‑1 (MQ=38)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGTTCAGGtgtg < 1:809910/62‑1 (MQ=38)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:682543/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1056171/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:371202/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:374039/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:376555/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:405944/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:454139/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:496224/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:521910/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:523005/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:606795/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:618775/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:631760/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:635897/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:352127/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:68380/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:690548/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:764801/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:784803/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:809618/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:84682/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:850285/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:861337/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:873338/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:919874/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:98757/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1358964/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1108255/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1117348/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1142119/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1146813/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1159511/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1176710/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1215901/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:125591/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1273163/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1301779/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1334690/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:310874/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1364165/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1409273/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1429789/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1451777/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1458876/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1459652/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1464362/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:167405/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:225507/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:235468/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:280296/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:295827/62‑1 (MQ=255)
gggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGCCGGTCAGGtgtg < 1:1296964/62‑1 (MQ=38)
ggcgTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:1464518/61‑1 (MQ=255)
gTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGtgtg < 1:934736/58‑1 (MQ=255)
|
GGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTG > W3110S.gb/2896386‑2896447
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
